SRR3554012_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554012_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	518843
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	1936	0.37313792418901287	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	1718	0.331121360411531	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1337	0.2576887420664825	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	1026	0.19774768089768965	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	853	0.16440426101922934	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC	602	0.11602739171579841	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	572	0.11024529578311743	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC	558	0.10754698434786632	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATCT	30	2.1631913E-6	45.000004	16
AACATCG	30	2.1631913E-6	45.000004	10
ACTGCGG	50	2.1827873E-11	45.0	2
CACATCG	20	7.029704E-4	45.0	2
CGACCTT	20	7.029704E-4	45.0	28
CACGCCG	45	3.8380676E-10	45.0	26
TCGATAG	20	7.029704E-4	45.0	1
TGTGACG	20	7.029704E-4	45.0	1
AACGGGT	55	1.8189894E-12	45.0	4
GCCGATA	25	3.8878366E-5	45.0	9
GGACGTC	20	7.029704E-4	45.0	8
TTAACGA	25	3.8878366E-5	45.0	13
ACGTCAC	20	7.029704E-4	45.0	10
CGGTATA	20	7.029704E-4	45.0	38
ATCGGAG	20	7.029704E-4	45.0	1
TATACGG	25	3.8878366E-5	45.0	3
CATCCGG	20	7.029704E-4	45.0	2
GTGCGTT	20	7.029704E-4	45.0	1
TCGAACG	25	3.8878366E-5	45.0	1
CGTAAGG	90	0.0	42.5	2