SRR3554006_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554006_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	565641
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1157	0.20454670011544424	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	884	0.15628287199831695	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	683	0.12074796558241004	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	677	0.11968722210730835	No Hit
CTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT	605	0.10695830040608797	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	583	0.10306890766404839	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGT	20	7.030245E-4	45.0	18
CGGCGTA	25	3.888285E-5	45.0	41
CCTTAAC	20	7.030245E-4	45.0	38
ACACGAT	20	7.030245E-4	45.0	10
ACGTTAG	25	3.888285E-5	45.0	1
CGGTTAC	25	3.888285E-5	45.0	22
GACCCAA	20	7.030245E-4	45.0	30
AACGGTT	25	3.888285E-5	45.0	20
TACGCTA	25	3.888285E-5	45.0	26
CGTACAT	25	3.888285E-5	45.0	35
TCGTACA	25	3.888285E-5	45.0	34
TATACGT	20	7.030245E-4	45.0	30
TGTAACG	20	7.030245E-4	45.0	1
GACCTAG	25	3.888285E-5	45.0	1
ATCGGGT	30	2.1635387E-6	44.999996	4
AACACGT	120	0.0	44.999996	41
GGTATGC	120	0.0	43.124996	8
ACATACG	160	0.0	42.1875	17
CGTTAGG	110	0.0	40.909092	2
GTACGAG	55	6.002665E-11	40.909092	1