SRR3554001_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554001_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	686627
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1009	0.1469502364456976	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	890	0.12961913819293444	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	839	0.12219152465603597	No Hit
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	811	0.11811361918479756	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	712	0.10369531055434757	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	705	0.10267583418653796	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCT	20	7.0313E-4	45.0	30
ACCGCAT	20	7.0313E-4	45.0	15
ATTCACG	20	7.0313E-4	45.0	34
TATTCGA	25	3.8891594E-5	45.0	26
CATACGT	20	7.0313E-4	45.0	14
CAGTCGA	25	3.8891594E-5	45.0	39
AATAGTC	20	7.0313E-4	45.0	34
ATACGTC	20	7.0313E-4	45.0	15
CGTCCAA	20	7.0313E-4	45.0	18
TATCGTC	20	7.0313E-4	45.0	26
ATCGCCC	25	3.8891594E-5	45.0	29
TCTATCG	20	7.0313E-4	45.0	24
CTAACGG	30	2.1642209E-6	44.999996	2
ATACGAG	30	2.1642209E-6	44.999996	1
TGCGTAG	60	0.0	44.999996	1
CGAATAT	105	0.0	40.714287	14
TGCATAG	50	1.0804797E-9	40.5	1
GTTGATC	140	0.0	40.178574	16
CGTAAGG	110	0.0	38.863636	2
GACGTGA	35	6.2446125E-6	38.57143	9