SRR3553996_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553996_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	457599
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1740	0.3802455862010188	No Hit
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	1558	0.34047277201217657	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	1206	0.2635495269876027	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	1057	0.2309882670198143	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1055	0.23055120312762922	No Hit
CTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGCT	1039	0.22705469199014858	Illumina Single End Adapter 1 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	1017	0.2222469891761127	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	875	0.1912154528309721	No Hit
TCGAATGGGGTTTTATTAACAATGCTTCTGGAAACGAATGCATTTTAAATA	744	0.1625877678928494	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	673	0.14707199972027912	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	561	0.12259642175791467	No Hit
TCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	558	0.12194082591963706	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCC	538	0.11757018699778626	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	529	0.11560339948295342	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	503	0.10992156888454739	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	35	1.2097917E-7	45.000004	38
ACTATAG	35	1.2097917E-7	45.000004	26
CTGTCGG	20	7.0288294E-4	45.000004	2
CGAACTA	25	3.887112E-5	45.000004	11
ATTAGTC	40	6.7993824E-9	45.000004	31
CATATAA	25	3.887112E-5	45.000004	34
ATTAGCG	20	7.0288294E-4	45.000004	1
CAACGAC	20	7.0288294E-4	45.000004	12
CGTTGAT	40	6.7993824E-9	45.000004	25
CAACCCG	25	3.887112E-5	45.000004	23
ATTCGGT	20	7.0288294E-4	45.000004	10
CACGATA	20	7.0288294E-4	45.000004	23
TAAGTGC	25	3.887112E-5	45.000004	13
CAATTCG	20	7.0288294E-4	45.000004	20
TAACGCA	50	2.1827873E-11	45.000004	26
TACGCTA	25	3.887112E-5	45.000004	1
CCCGTAG	20	7.0288294E-4	45.000004	20
CCGTAGG	20	7.0288294E-4	45.000004	1
GCCGAAC	25	3.887112E-5	45.000004	9
CGGATCG	20	7.0288294E-4	45.000004	2