SRR3553990_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553990_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	671330
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2397	0.3570524183337554	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGC	2191	0.32636706239852237	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	2056	0.30625772719824823	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTC	1954	0.29106400726915227	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCG	1913	0.2849567276898098	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1243	0.18515484188104211	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1240	0.18470796776548046	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	919	0.13689243740038431	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	891	0.13272161232180893	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCC	851	0.126763290780987	No Hit
CTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGCT	808	0.12035809512460341	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGCTTTCAT	771	0.1148466476993431	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	718	0.10695187165775401	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	718	0.10695187165775401	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	45	3.8380676E-10	45.000004	1
CTATAGT	25	3.889065E-5	45.000004	11
TAGCCGT	25	3.889065E-5	45.000004	44
CGTGTTC	25	3.889065E-5	45.000004	25
ATACGAG	65	0.0	45.000004	1
AGCCGTA	20	7.0311874E-4	45.0	12
CAAACGT	20	7.0311874E-4	45.0	45
CGCGATA	20	7.0311874E-4	45.0	33
TGCGCGT	20	7.0311874E-4	45.0	36
CGTAGTG	20	7.0311874E-4	45.0	28
CGGTGTA	35	1.2109194E-7	45.0	24
TTGCGAC	20	7.0311874E-4	45.0	15
ACTCGTA	20	7.0311874E-4	45.0	19
CATCGTT	75	0.0	45.0	36
CATAAGT	20	7.0311874E-4	45.0	14
CCGTTGT	20	7.0311874E-4	45.0	19
ATCGCCA	70	0.0	45.0	24
TACGTTA	20	7.0311874E-4	45.0	25
TGCAACG	20	7.0311874E-4	45.0	1
GCTACGA	95	0.0	44.999996	10