SRR3553989_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553989_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1028843
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1913	0.1859370185732906	No Hit
GCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	1723	0.16746967224348128	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1596	0.1551257091703982	No Hit
CTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGCT	1103	0.10720780527252458	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1064	0.10341713944693214	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1049	0.1019591910524735	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	20	7.03294E-4	45.000004	32
TAAACGT	20	7.03294E-4	45.000004	39
TCGATAG	45	3.8562575E-10	45.000004	1
TAATTCG	20	7.03294E-4	45.000004	16
AACGCAT	20	7.03294E-4	45.000004	42
CGTACGA	20	7.03294E-4	45.000004	39
ATACGCG	20	7.03294E-4	45.000004	1
TACGTAC	20	7.03294E-4	45.000004	37
GTACGAA	25	3.89052E-5	45.0	40
GTATGCG	30	2.1652795E-6	44.999996	1
GTGTACG	55	6.184564E-11	40.909092	1
TATAGCG	55	6.184564E-11	40.909092	1
GTACGAT	55	6.184564E-11	40.909092	10
GGTACGA	100	0.0	40.5	9
ACGTGAG	440	0.0	39.886364	44
AACACGT	430	0.0	39.76744	41
CGTGTAC	85	0.0	39.705883	18
CGTAAGG	165	0.0	39.545456	2
CTAACGC	80	0.0	39.375004	25
GACGCAA	40	3.4577533E-7	39.375004	26