SRR3553985_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553985_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	742990
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1353	0.18210204713387798	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	1131	0.1522227755420665	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1102	0.1483196274512443	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	892	0.12005545162115237	No Hit
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT	835	0.11238374675298457	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	822	0.1106340596777884	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	815	0.109691920483452	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGAACG	20	7.031674E-4	45.0	1
CGCAATA	20	7.031674E-4	45.0	2
ATACGCG	20	7.031674E-4	45.0	1
CGATCTA	20	7.031674E-4	45.0	10
TGTCGGT	25	3.8894686E-5	45.0	37
CCGCATT	20	7.031674E-4	45.0	23
GCACTAG	20	7.031674E-4	45.0	1
CACTATC	30	2.164461E-6	44.999996	29
TATAGCG	30	2.164461E-6	44.999996	1
ATTGGGT	80	0.0	42.1875	4
CGACGGT	55	6.002665E-11	40.909092	28
CGTAAGG	210	0.0	40.714287	2
GCGATCT	50	1.0804797E-9	40.5	9
ACGTAAG	50	1.0804797E-9	40.5	1
ATACGCA	50	1.0804797E-9	40.5	27
AATACGC	50	1.0804797E-9	40.5	26
GTTAGCG	45	1.9266736E-8	40.0	1
TCGTAAC	130	0.0	39.807693	34
CGTAACC	130	0.0	39.807693	35
TCGATAG	40	3.4560253E-7	39.375	1