SRR3553968_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553968_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1795406
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	3967	0.2209528095595091	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	3494	0.19460779344616203	TruSeq Adapter, Index 13 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTC	3144	0.17511359547645491	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3053	0.17004510400433107	No Hit
AGTGAATGATACCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATG	2924	0.16286009960978187	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCG	2909	0.16202463398250871	No Hit
CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCT	2485	0.13840880558492064	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGC	2444	0.13612519953704064	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2022	0.11262076655642232	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTCG	35	1.2124474E-7	45.000004	1
GTCAAGC	785	0.0	39.554142	16
AAATGCG	40	3.4596633E-7	39.375	1
ACACGTG	725	0.0	39.103447	42
TAGTGCG	190	0.0	39.07895	1
CTACGTT	35	6.2502513E-6	38.57143	39
CACGACC	750	0.0	38.4	27
GCGAGAC	750	0.0	38.100002	21
ATAACGG	95	0.0	37.894737	2
AACACGT	745	0.0	37.75168	41
AATGCGT	30	1.14017734E-4	37.500004	34
ACGATAG	30	1.14017734E-4	37.500004	1
TATCGCG	60	1.5643309E-10	37.500004	1
ACTACGG	90	0.0	37.5	2
ACGACCA	790	0.0	37.310123	28
TCGTTTA	115	0.0	37.173912	38
CGTCATA	85	0.0	37.058823	38
CACAACG	555	0.0	36.89189	12
GACACGA	785	0.0	36.6879	25
AGTGAAT	1895	0.0	36.451187	1