SRR3553965_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553965_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	698617
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	3299	0.4722186834846561	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2389	0.341961332174854	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	2364	0.3383828335124968	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG	2230	0.31920208068226225	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	2178	0.31175880346455925	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC	2045	0.29272119058081897	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	1948	0.27883661577087304	Illumina Single End Adapter 2 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1451	0.20769606236321186	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1026	0.14686158510313949	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCC	847	0.12123953468066194	No Hit
TCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	840	0.12023755505520192	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTTGTGGT	813	0.11637277649985615	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAA	20	7.0313836E-4	45.000004	19
TCGTTGC	40	6.8084773E-9	45.000004	16
CGACGGT	30	2.1642736E-6	45.000004	28
ACGCATC	35	1.2110104E-7	45.000004	10
CGCGATT	25	3.8892285E-5	45.000004	30
TTGCGTA	20	7.0313836E-4	45.000004	14
GGACGAT	20	7.0313836E-4	45.000004	8
TATAGCG	50	2.1827873E-11	45.000004	1
CGGTCGA	35	1.2110104E-7	45.000004	41
GCTACGA	30	2.1642736E-6	45.000004	10
AATCGTG	25	3.8892285E-5	45.000004	14
CGTAAGG	85	0.0	42.35294	2
ATTGCGG	80	0.0	42.187504	2
TCGTTTA	65	0.0	41.538464	38
ACGCATT	65	0.0	41.538464	17
TACGCAT	65	0.0	41.538464	16
TATTAGT	50	1.0804797E-9	40.500004	30
GTTGCGC	50	1.0804797E-9	40.500004	9
CGTTGCG	45	1.9264917E-8	40.0	17
GTTAGCG	90	0.0	40.0	1