SRR3553962_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553962_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	863967
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2289	0.26494067481744094	No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	1513	0.17512242944464315	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCG	1505	0.17419646815214007	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	1436	0.16621005200430108	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC	1306	0.15116318100112622	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1266	0.14653337453861084	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGC	1257	0.1454916680845449	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1119	0.12951883578886692	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1090	0.1261622261035433	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	983	0.11377749381631475	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTAT	20	7.032314E-4	45.0	21
CAACGAC	25	3.889998E-5	45.0	12
CGTGCAT	20	7.032314E-4	45.0	19
TTCGTAA	20	7.032314E-4	45.0	18
GGATACG	40	6.8121153E-9	45.0	1
GTAGCGT	20	7.032314E-4	45.0	17
TCGTGAC	20	7.032314E-4	45.0	13
TCGTAAA	20	7.032314E-4	45.0	19
CGACTTT	20	7.032314E-4	45.0	45
ATACGCG	45	3.8380676E-10	45.0	1
GCGCTAA	20	7.032314E-4	45.0	9
TGTCGTG	20	7.032314E-4	45.0	22
GCGTATG	25	3.889998E-5	45.0	1
TTGTGCG	75	0.0	42.000004	1
TCGAGAG	75	0.0	42.000004	1
GCGTAAG	60	3.6379788E-12	41.249996	1
AGTACGG	105	0.0	40.714287	2
GGTATTC	50	1.0804797E-9	40.5	8
ACCCAAT	50	1.0804797E-9	40.5	42
TATGGTC	85	0.0	39.705883	43