SRR3553957_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553957_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	726492
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2008	0.27639671187019266	No Hit
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	1854	0.25519895607935117	TruSeq Adapter, Index 14 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTC	1624	0.2235399701579646	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGC	1459	0.20082808895349158	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCG	1458	0.20069044118861595	No Hit
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	1212	0.16682909102921986	TruSeq Adapter, Index 15 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	1123	0.154578439955292	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1117	0.15375255336603844	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1011	0.1391618902892255	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	864	0.11892766885251319	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	779	0.10722760883808768	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCACG	30	2.1643937E-6	45.000004	1
ATATCCG	30	2.1643937E-6	45.000004	22
CGGTCGA	25	3.8893828E-5	45.000004	41
CATTTCG	30	2.1643937E-6	45.000004	13
CGCCAAA	25	3.8893828E-5	45.000004	43
TTCTACG	20	7.031571E-4	45.0	19
CACGGAT	20	7.031571E-4	45.0	34
TCCGACA	20	7.031571E-4	45.0	25
CCTGTCG	20	7.031571E-4	45.0	37
AACGCAC	20	7.031571E-4	45.0	18
CATACCG	20	7.031571E-4	45.0	1
ACCGTAA	20	7.031571E-4	45.0	17
CTTTACG	20	7.031571E-4	45.0	37
CGACTTA	35	1.2111013E-7	45.0	11
ATCGGCT	20	7.031571E-4	45.0	17
TATACGA	20	7.031571E-4	45.0	13
TGTAACG	35	1.2111013E-7	45.0	1
GCGTAGC	20	7.031571E-4	45.0	1
TCGAACG	20	7.031571E-4	45.0	1
TAGTATC	20	7.031571E-4	45.0	25