SRR3553951_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553951_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	845344
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	2843	0.3363127910057917	No Hit
CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	1869	0.22109342468864748	No Hit
CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT	1674	0.19802589241776128	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1237	0.14633096112351895	No Hit
TCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	1063	0.12574762463565128	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	941	0.1113156300866866	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCC	25	3.8899263E-5	45.000004	33
GTCGAAT	20	7.032225E-4	45.000004	22
TTAGCGA	20	7.032225E-4	45.000004	1
TCTAGCG	25	3.8899263E-5	45.000004	1
CGCTCGA	25	3.8899263E-5	45.000004	43
TGCGACG	50	2.1827873E-11	45.000004	1
ACGCTAT	30	2.1648175E-6	45.000004	40
GTATACG	25	3.8899263E-5	45.000004	1
ACGAGGT	20	7.032225E-4	45.000004	2
TACGTAG	25	3.8899263E-5	45.000004	1
TATCGTG	55	1.8189894E-12	45.0	1
CACGACC	175	0.0	42.42857	27
AACACGT	170	0.0	42.35294	41
ACGCATT	150	0.0	42.0	17
TACGCAT	150	0.0	42.0	16
ACGTTTA	50	1.0804797E-9	40.500004	32
ACGACCA	185	0.0	40.135136	28
ACACGAC	180	0.0	40.0	26
ATAACGC	45	1.9272193E-8	40.0	11
TCGTTTA	40	3.456771E-7	39.375004	38