SRR3553950_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553950_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	620431
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	1650	0.2659441581739146	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	1469	0.23677088991362455	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1171	0.18873976316463878	No Hit
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT	1076	0.17342782678492855	No Hit
TCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	849	0.13684035775130515	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	823	0.132649722531595	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCC	796	0.12829790903420366	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	732	0.11798249926260938	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	688	0.11089065504463831	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGTAG	45	3.8380676E-10	45.000004	26
TCGTTCA	40	6.8066583E-9	45.0	16
CTATCGC	20	7.0307736E-4	45.0	13
TAGACCG	20	7.0307736E-4	45.0	12
GACGTAT	20	7.0307736E-4	45.0	38
ACCGAGT	20	7.0307736E-4	45.0	15
GGATCGT	35	1.2107193E-7	45.0	8
CTACGTC	20	7.0307736E-4	45.0	34
TCCGTAG	20	7.0307736E-4	45.0	14
TTAGTCG	20	7.0307736E-4	45.0	1
ACGTATC	20	7.0307736E-4	45.0	39
CCTATCG	20	7.0307736E-4	45.0	12
TCACGTA	20	7.0307736E-4	45.0	18
ACCGGTA	30	2.1638807E-6	44.999996	11
GCGACAC	25	3.888724E-5	44.999996	44
ATTAGCG	30	2.1638807E-6	44.999996	1
CGGTTGA	25	3.888724E-5	44.999996	2
CGCATAG	25	3.888724E-5	44.999996	25
GACCCGT	30	2.1638807E-6	44.999996	24
CGCTCGT	50	2.1827873E-11	44.999996	13