SRR3553944_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553944_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	675365
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	2937	0.43487595596455253	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG	2842	0.4208094882026756	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	2466	0.3651358894819838	TruSeq Adapter, Index 23 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	2123	0.314348537457523	No Hit
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	1912	0.28310617221798584	TruSeq Adapter, Index 23 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	1311	0.19411725511390138	TruSeq Adapter, Index 22 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	924	0.13681490749446595	TruSeq Adapter, Index 23 (95% over 23bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	821	0.12156389507895729	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	773	0.11445662715716687	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTAC	30	2.1641663E-6	45.000004	39
TAGTGCG	30	2.1641663E-6	45.000004	1
CAGGTCG	20	7.031219E-4	45.0	1
AAATCGT	20	7.031219E-4	45.0	21
GTCGATG	20	7.031219E-4	45.0	1
CGAAAAT	20	7.031219E-4	45.0	29
GCTATCG	20	7.031219E-4	45.0	1
CGTTATC	20	7.031219E-4	45.0	41
TCGCTAA	20	7.031219E-4	45.0	11
GATATCG	20	7.031219E-4	45.0	12
TAAATCG	20	7.031219E-4	45.0	20
ATCGGCA	20	7.031219E-4	45.0	5
ATACGAC	20	7.031219E-4	45.0	19
GCCACGC	20	7.031219E-4	45.0	35
GTGCGTT	20	7.031219E-4	45.0	12
ACTACGG	25	3.8890925E-5	44.999996	9
TATAGCG	25	3.8890925E-5	44.999996	1
GTTATCG	25	3.8890925E-5	44.999996	1
GGCCGAT	95	0.0	42.63158	8
CGGTAGT	150	0.0	42.0	12