SRR3553941_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553941_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	959383
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	6568	0.6846066690779387	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	6208	0.6470825520152015	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	5159	0.5377414442407256	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	3143	0.32760638868939723	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTACAGT	1500	0.15635048776140498	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1431	0.14915836532438034	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	1384	0.14425938337452301	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT	1371	0.14290434581392417	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1203	0.1253930911846468	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	1160	0.12091104386881986	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTC	1158	0.12070257655180465	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGT	20	7.0327026E-4	45.0	19
CCGTCGA	35	1.211647E-7	45.0	41
ATATCGT	20	7.0327026E-4	45.0	2
TCGCTAA	20	7.0327026E-4	45.0	45
AACGCAC	20	7.0327026E-4	45.0	42
ACTACGC	20	7.0327026E-4	45.0	28
TCGAGTA	20	7.0327026E-4	45.0	17
TATACGC	25	3.8903214E-5	45.0	45
CCGCATT	25	3.8903214E-5	45.0	29
TAACACG	30	2.165125E-6	44.999996	26
GCTACGA	110	0.0	42.954548	10
CTAACGG	80	0.0	42.1875	2
GTAAGCG	55	6.002665E-11	40.909092	1
CGACTAA	90	0.0	40.0	17
GTAATCG	40	3.457426E-7	39.375	1
TACGATG	40	3.457426E-7	39.375	29
CGTCGAA	40	3.457426E-7	39.375	42
TTAACGG	120	0.0	39.374996	2
GGACCGT	75	0.0	39.000004	8
TAAGGGT	295	0.0	38.898304	4