SRR3553940_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553940_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	695187
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1697	0.24410698128704938	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1403	0.20181620197155586	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1106	0.1590938840916185	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	887	0.12759156888722026	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	885	0.1273038765109244	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	799	0.11493310433020179	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	796	0.114501565765758	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	721	0.10371310165466271	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTA	25	3.889209E-5	45.000004	24
GATCGGA	20	7.03136E-4	45.000004	8
CACGCGT	30	2.164259E-6	45.000004	42
CACGATT	20	7.03136E-4	45.000004	24
AAGCGAT	20	7.03136E-4	45.000004	23
GCGCATT	25	3.889209E-5	45.000004	23
TTATCCG	35	1.2109922E-7	45.000004	1
ATCGTGT	20	7.03136E-4	45.000004	10
AATGCGT	20	7.03136E-4	45.000004	31
GTTCGCA	20	7.03136E-4	45.000004	17
CGTAGCA	20	7.03136E-4	45.000004	29
CCGACCG	35	1.2109922E-7	45.000004	15
CAATGCG	25	3.889209E-5	45.000004	1
TCGAGTA	20	7.03136E-4	45.000004	38
CAGTACG	20	7.03136E-4	45.000004	1
CGAATAT	65	0.0	44.999996	14
TATTAGG	85	0.0	42.35294	2
ACGCATT	225	0.0	42.0	17
CGCATGG	70	0.0	41.785717	2
GCGTTAG	70	0.0	41.785717	1