SRR3553939_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553939_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	576437
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2143	0.3717665590515529	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1151	0.19967489942526243	No Hit
GCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	1108	0.19221528111484865	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1068	0.1852761012912079	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	870	0.1509271611641862	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	794	0.13774271949926878	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	773	0.1340996500918574	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCC	768	0.13323225261390229	No Hit
CTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGCT	653	0.11328211062093517	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCGAG	35	1.2105193E-7	45.000004	1
CGAACAT	20	7.0303585E-4	45.0	32
ACGCATC	20	7.0303585E-4	45.0	39
CTATCGA	20	7.0303585E-4	45.0	14
GCCGGAT	20	7.0303585E-4	45.0	38
ATTCGGT	20	7.0303585E-4	45.0	11
GCCGATT	20	7.0303585E-4	45.0	9
GTATACG	25	3.8883773E-5	45.0	1
GCTACGA	100	0.0	45.0	10
AGGATCG	20	7.0303585E-4	45.0	45
ATTGCGT	25	3.8883773E-5	45.0	40
TAAGCCG	20	7.0303585E-4	45.0	35
TACGTAG	40	6.8048394E-9	45.0	1
CGGGTAT	65	0.0	44.999996	6
CCGCAAA	30	2.1636115E-6	44.999996	45
CATACGA	145	0.0	43.44828	18
CTACGAA	105	0.0	42.857143	11
ACATACG	160	0.0	39.375	17
GGTTACG	40	3.4542245E-7	39.375	1
ATAGGGA	395	0.0	39.3038	4