SRR3553929_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553929_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1172881
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3214	0.27402609471890155	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1789	0.15253039310893432	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1479	0.1260997492499239	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1368	0.11663587354556856	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	20	7.0333446E-4	45.000004	20
ACGCTAG	45	3.8562575E-10	45.000004	1
ACGTCAC	20	7.0333446E-4	45.000004	17
ATCGATT	25	3.8908554E-5	45.0	32
CGTGTAC	230	0.0	40.108692	18
ACACGAC	855	0.0	39.73684	26
AACGGGC	250	0.0	39.6	4
TGGTCAA	900	0.0	39.25	14
CACGACC	880	0.0	38.863636	27
GCGAGAC	905	0.0	38.78453	21
TCAAGCG	930	0.0	38.70968	17
GTCAAGC	925	0.0	38.675674	16
CAACGTT	35	6.2483996E-6	38.571426	31
CTGCGTA	35	6.2483996E-6	38.571426	21
TTACGCG	70	0.0	38.571426	1
AACACGT	825	0.0	38.18182	41
ACGACCA	890	0.0	38.17416	28
AGACACG	900	0.0	38.0	24
CATGGTC	930	0.0	37.741936	12
ATGGTCA	935	0.0	37.540104	13