SRR3553927_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553927_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	720693
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1842	0.25558733052770044	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1631	0.2263099544466229	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	1172	0.16262125482001352	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1031	0.14305675232033613	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	904	0.12543482453693874	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCC	887	0.1230759838100273	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	884	0.12265971779939586	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	877	0.12168843044125584	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	748	0.10378899198410418	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTACG	20	7.0315326E-4	45.0	1
CGTGCCG	25	3.889353E-5	45.0	12
CACGATA	25	3.889353E-5	45.0	19
CCGCTTA	20	7.0315326E-4	45.0	18
TACGCAT	45	3.8380676E-10	45.0	16
TCGACAG	20	7.0315326E-4	45.0	1
ATTCGCG	30	2.16437E-6	44.999996	1
CGGTCTA	65	0.0	44.999996	31
CGTTTAG	30	2.16437E-6	44.999996	2
ATAACGG	100	0.0	42.75	2
CGACGGT	75	0.0	42.0	28
ATACCGG	60	3.6379788E-12	41.249996	2
TTACGAG	55	6.002665E-11	40.909092	1
GCGTAAG	55	6.002665E-11	40.909092	1
GGCCGAT	155	0.0	40.645164	8
ACGCATT	50	1.0804797E-9	40.5	17
ACTAAGG	50	1.0804797E-9	40.5	2
AACACGT	140	0.0	40.178574	41
TAGCACG	45	1.9266736E-8	40.0	1
TACGAGG	130	0.0	39.80769	2