SRR3553926_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553926_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	902059
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG	5683	0.6300031372670745	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTC	3988	0.44209968527557514	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGC	3182	0.35274854527253763	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2661	0.2949917910025841	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1288	0.14278445201477952	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1251	0.13868272474416862	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	1153	0.12781869035173973	Illumina Single End Adapter 1 (95% over 21bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1096	0.12149981320512294	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	972	0.10775348397388641	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT	915	0.10143460682726961	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTACCG	25	3.8901362E-5	45.0	1
CGATAGA	20	7.0324785E-4	45.0	40
ATCGATA	20	7.0324785E-4	45.0	28
TAATCGA	20	7.0324785E-4	45.0	26
CGGACGT	20	7.0324785E-4	45.0	44
CCGATGA	1920	0.0	43.47656	18
GTCGAAT	435	0.0	43.448273	43
CGATGAA	2030	0.0	42.89409	19
GATGAAT	2105	0.0	42.755344	20
ATGAATG	2115	0.0	42.127663	21
AGTACGG	75	0.0	42.0	2
GACGTAG	65	0.0	41.53846	1
TCGAATG	455	0.0	41.53846	44
GGTCGAA	465	0.0	41.129032	42
CGTAAGG	115	0.0	41.08696	2
TATTACG	50	1.0804797E-9	40.5	1
CGGTCGA	275	0.0	40.090908	41
CGAATGC	395	0.0	39.873417	45
CCACCGA	2330	0.0	39.399143	15
AACCCGT	40	3.4571167E-7	39.375	38