SRR3553920_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553920_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	812681
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1991	0.24499157726094248	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1354	0.16660903847881273	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC	927	0.11406689709738506	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	844	0.10385378764853614	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGCG	25	3.889793E-5	45.0	24
ACGTTAC	20	7.032066E-4	45.0	43
ATTACGT	20	7.032066E-4	45.0	18
CACGAAC	20	7.032066E-4	45.0	41
ATACTCG	40	6.8102963E-9	45.0	44
ATCGTAA	20	7.032066E-4	45.0	44
CCGTAGT	20	7.032066E-4	45.0	27
GTCACGA	25	3.889793E-5	45.0	8
GTCGTTA	20	7.032066E-4	45.0	19
TTAACGG	40	6.8102963E-9	45.0	2
TCGTAAG	20	7.032066E-4	45.0	45
ATAACGC	35	1.2113378E-7	45.0	11
GTGCGAT	20	7.032066E-4	45.0	8
CACGGGC	200	0.0	41.625	4
GCCGATT	65	0.0	41.53846	9
CGCATCG	40	3.4565528E-7	39.375	21
CGCATAC	40	3.4565528E-7	39.375	36
CGGACGA	40	3.4565528E-7	39.375	32
ACGACCA	290	0.0	38.793102	28
TACGCAT	105	0.0	38.57143	16