SRR3553916_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553916_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	601470
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1578	0.26235722479924184	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1502	0.2497215156200642	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	949	0.15778010540841605	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	802	0.13333998370658554	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	748	0.12436197981611717	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	25	3.8885795E-5	45.000004	1
AAGCGTA	25	3.8885795E-5	45.000004	22
ATATCGT	25	3.8885795E-5	45.000004	26
AATTGCG	30	2.1637698E-6	45.000004	1
TACGAAT	50	2.1827873E-11	45.000004	12
ATGCGAG	25	3.8885795E-5	45.000004	1
TTACGCG	25	3.8885795E-5	45.000004	1
CCAACCG	25	3.8885795E-5	45.000004	33
GCTAACG	25	3.8885795E-5	45.000004	1
AACGTAG	55	1.8189894E-12	45.0	1
ATTCGAT	20	7.030602E-4	45.0	31
AACGCCC	20	7.030602E-4	45.0	24
GTCGTAC	20	7.030602E-4	45.0	27
TTGCGCA	20	7.030602E-4	45.0	1
TCGTACT	20	7.030602E-4	45.0	28
TTACGGA	20	7.030602E-4	45.0	44
TATACGG	35	1.2106284E-7	45.0	2
TATCGTT	20	7.030602E-4	45.0	12
TAATGCG	20	7.030602E-4	45.0	1
TACACGT	20	7.030602E-4	45.0	19