SRR3553913_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553913_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	540869
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1864	0.3446305852248881	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1032	0.19080405791420843	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1030	0.19043428260817316	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	819	0.1514229878214503	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	767	0.1418088298645328	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGGT	30	2.1633623E-6	45.000004	31
GTCGATG	20	7.02997E-4	45.000004	1
GTACAAC	35	1.2103374E-7	45.000004	10
GAATGCG	20	7.02997E-4	45.000004	1
ATTCGAC	20	7.02997E-4	45.000004	40
GGTCACG	20	7.02997E-4	45.000004	1
CGCTGGT	20	7.02997E-4	45.000004	32
GCGTTAG	35	1.2103374E-7	45.000004	1
CGTTAGG	40	6.8030204E-9	45.000004	2
ACGATAT	20	7.02997E-4	45.000004	28
CCCGTAG	20	7.02997E-4	45.000004	43
TAACCGG	25	3.8880564E-5	45.000004	2
TATTCGA	20	7.02997E-4	45.000004	39
CGAGGAC	35	1.2103374E-7	45.000004	20
CCATACG	20	7.02997E-4	45.000004	28
AGACCGC	20	7.02997E-4	45.000004	11
CGTACTC	30	2.1633623E-6	45.000004	45
GGACGAT	20	7.02997E-4	45.000004	1
CGTACAT	45	3.8380676E-10	45.000004	35
TCGTACA	45	3.8380676E-10	45.000004	34