SRR3553909_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553909_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	835607
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2879	0.3445399571808278	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2780	0.33269228237676324	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1202	0.14384752640894582	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	1137	0.13606875002243876	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCC	1134	0.13570972957383076	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	1121	0.13415397429652937	No Hit
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	886	0.10603070582223462	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	20	7.03218E-4	45.0	1
ACCGGAT	20	7.03218E-4	45.0	35
CACGGAT	20	7.03218E-4	45.0	4
ATAATCG	20	7.03218E-4	45.0	38
TATATCG	20	7.03218E-4	45.0	33
TTCGTGC	20	7.03218E-4	45.0	36
CGACATA	20	7.03218E-4	45.0	32
TGACGGA	20	7.03218E-4	45.0	29
ATATCGC	20	7.03218E-4	45.0	34
AACGCCG	20	7.03218E-4	45.0	13
CGTACTC	25	3.8898892E-5	45.0	45
ACGTCGC	20	7.03218E-4	45.0	20
CGCGTAC	20	7.03218E-4	45.0	43
ATACCGG	20	7.03218E-4	45.0	2
GCCCGTA	20	7.03218E-4	45.0	9
GTCGGTT	20	7.03218E-4	45.0	12
CAATGCG	30	2.1647884E-6	44.999996	1
GTACGAT	30	2.1647884E-6	44.999996	10
CCCGCTA	80	0.0	42.1875	23
GTTACGG	70	0.0	41.785717	2