SRR3553902_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553902_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	317923
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1844	0.5800146576372266	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1114	0.35039931052487555	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	951	0.29912903438883	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	773	0.24314063468198274	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	552	0.17362694740550383	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	524	0.16481978340667394	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	483	0.15192357897981587	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC	482	0.15160903740842907	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	454	0.14280187340959918	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	436	0.13714012512463708	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	420	0.13210745998244858	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	341	0.10725867584289277	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATT	45	3.8380676E-10	45.000004	17
TTCAACG	25	3.8844177E-5	45.000004	1
TCTAGTC	25	3.8844177E-5	45.000004	29
GCCGATG	50	2.1827873E-11	45.000004	9
TACGCAT	45	3.8380676E-10	45.000004	16
TTCGCGT	25	3.8844177E-5	45.000004	40
CTCTAGT	25	3.8844177E-5	45.000004	28
TAGTCGG	25	3.8844177E-5	45.000004	31
TACCCGA	20	7.02558E-4	45.0	37
CGTATTA	20	7.02558E-4	45.0	17
CTCGTCT	20	7.02558E-4	45.0	35
GATCGCT	20	7.02558E-4	45.0	10
CAACGGT	20	7.02558E-4	45.0	44
CGTGCGG	35	1.2082273E-7	45.0	2
CGCATCG	20	7.02558E-4	45.0	21
GGCCGAT	75	0.0	45.0	8
GGATCGC	40	6.7884685E-9	45.0	9
TATATCG	20	7.02558E-4	45.0	21
ATTCGGG	20	7.02558E-4	45.0	3
TCGATAG	35	1.2082273E-7	45.0	1