SRR3553900_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553900_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	784249
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1548	0.19738628930352475	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1409	0.17966232663350543	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTGA	20	7.0319144E-4	45.0	16
CGTTGTC	20	7.0319144E-4	45.0	36
CCGTCGA	25	3.8896687E-5	45.0	41
GTATGCG	25	3.8896687E-5	45.0	1
CGCAAAC	20	7.0319144E-4	45.0	8
CATGCGG	65	0.0	41.53846	2
TATAGCG	65	0.0	41.53846	1
CACGACC	250	0.0	40.499996	27
TTACCGG	45	1.9270374E-8	40.0	2
TATGCGG	110	0.0	38.86364	2
CGACGGG	175	0.0	38.57143	3
CGCATCG	35	6.245753E-6	38.571426	21
TAACGCC	35	6.245753E-6	38.571426	12
CGACACC	35	6.245753E-6	38.571426	35
CTACGAA	35	6.245753E-6	38.571426	11
ACGACTA	35	6.245753E-6	38.571426	42
CGTTAGG	65	9.094947E-12	38.07692	2
TAATGCG	65	9.094947E-12	38.07692	1
TCGTTGA	60	1.546141E-10	37.500004	24
GTCGAAT	30	1.13959104E-4	37.500004	43