SRR3553898_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553898_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	810720
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2359	0.2909759226366686	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1888	0.23287941582790608	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	891	0.10990230905861456	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCC	868	0.1070653246496941	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTGA	20	7.032056E-4	45.0	18
GGTCGAT	20	7.032056E-4	45.0	8
ACGTTAG	20	7.032056E-4	45.0	1
CTATCGC	25	3.889785E-5	45.0	25
AAGCGAT	20	7.032056E-4	45.0	34
CGACACG	20	7.032056E-4	45.0	18
CATTCGC	25	3.889785E-5	45.0	26
ATCGTAG	35	1.2113378E-7	45.0	1
CCCGTCA	20	7.032056E-4	45.0	12
CCCGTAG	20	7.032056E-4	45.0	30
TGACCGG	20	7.032056E-4	45.0	2
CATACGA	105	0.0	45.0	18
GCGATAT	40	6.8102963E-9	45.0	9
GTATACG	25	3.889785E-5	45.0	1
CGCGTTA	20	7.032056E-4	45.0	30
ATACGCA	20	7.032056E-4	45.0	12
CGATACG	20	7.032056E-4	45.0	10
AATACGC	25	3.889785E-5	45.0	11
GCGTACT	20	7.032056E-4	45.0	28
GCGTACG	40	6.8102963E-9	45.0	1