SRR3553897_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553897_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	741702
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1520	0.2049340570741349	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1373	0.18511477655446526	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	760	0.10246702853706745	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	754	0.10165807831177481	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	20	7.031666E-4	45.0	35
GCGAAGT	20	7.031666E-4	45.0	44
CGTTAAC	20	7.031666E-4	45.0	42
TACGAAT	90	0.0	45.0	12
GCGATAT	40	6.8102963E-9	45.0	9
CGGTCTA	20	7.031666E-4	45.0	31
TCGACGA	25	3.889463E-5	45.0	22
TACAACG	20	7.031666E-4	45.0	42
AAATGCG	20	7.031666E-4	45.0	1
TATACGG	65	0.0	41.53846	2
TATCACG	50	1.0804797E-9	40.5	1
CTACGAA	100	0.0	40.5	11
CGAATAT	100	0.0	40.5	14
AGCTACG	100	0.0	40.5	9
GCTTGCG	45	1.9266736E-8	40.0	1
GCGAACA	40	3.456007E-7	39.375	9
TAGGTTG	40	3.456007E-7	39.375	1
CGCAAAC	40	3.456007E-7	39.375	20
ACGGGTA	115	0.0	39.130432	5
AGGCGAT	35	6.2452928E-6	38.571426	6