SRR3553886_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553886_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	664183
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1767	0.266041136253111	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1576	0.2372840015477662	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1008	0.15176540200517027	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	879	0.13234304401046096	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	779	0.11728695254169408	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	738	0.11111395503949967	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCC	726	0.10930722406324762	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	689	0.10373647021980387	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCCGTA	35	1.210883E-7	45.000004	42
ATTTCGT	30	2.1641117E-6	45.000004	38
TCGTTTA	50	2.1827873E-11	45.0	38
TCGTTAG	45	3.8380676E-10	45.0	1
GATCGGA	20	7.031134E-4	45.0	3
ACTCTCG	25	3.8890215E-5	45.0	29
TCGATTA	40	6.8084773E-9	45.0	41
TACATTA	20	7.031134E-4	45.0	28
CGTAGGT	25	3.8890215E-5	45.0	23
CTTGCGT	20	7.031134E-4	45.0	23
GTATACG	20	7.031134E-4	45.0	1
TATCGTC	20	7.031134E-4	45.0	35
TAATGCG	20	7.031134E-4	45.0	1
TACACCG	25	3.8890215E-5	45.0	20
AGTCGTA	25	3.8890215E-5	45.0	20
ATAGCGG	135	0.0	43.333332	2
CGTAAGG	65	0.0	41.53846	2
ACACGTG	230	0.0	41.08696	42
AACACGT	230	0.0	41.08696	41
CGCATCG	55	6.002665E-11	40.909092	21