SRR3553884_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553884_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	538904
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1572	0.29170316048869555	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1221	0.22657096625744103	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1076	0.19966450425307664	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	886	0.1644077609370129	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	751	0.139356917001915	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	633	0.11746062378457016	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	622	0.11541944390837701	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	571	0.10595579175511778	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGATCG	20	7.029947E-4	45.000004	21
ATTCGCG	20	7.029947E-4	45.000004	1
CCGTATT	20	7.029947E-4	45.000004	16
GTATGAT	20	7.029947E-4	45.000004	32
TGTTACG	20	7.029947E-4	45.000004	1
CATCCGA	20	7.029947E-4	45.000004	23
TAAGACG	20	7.029947E-4	45.000004	1
CTAACGG	25	3.888039E-5	45.0	2
ATATACG	25	3.888039E-5	45.0	1
TTAGTGC	25	3.888039E-5	45.0	14
ACGCATT	155	0.0	43.548386	17
CTACGCA	160	0.0	42.187504	15
AACGGGA	135	0.0	41.666664	4
TACGAAT	65	0.0	41.53846	12
TACGCAT	165	0.0	40.90909	16
CGCTACA	165	0.0	40.90909	28
TATGGGA	240	0.0	39.375004	4
TGGGCGA	385	0.0	39.15584	6
CGATTTA	35	6.242115E-6	38.571426	10
CTACGAA	70	0.0	38.571426	11