SRR3553882_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553882_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	332262
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2445	0.7358650703360601	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1279	0.3849371881226261	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	966	0.2907344204272532	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	764	0.2299390240232106	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	552	0.16613395452985896	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	501	0.15078462177438287	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	424	0.12761013898670326	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	419	0.12610530244204873	No Hit
ATATATATATATATATATATATATATATATATATATATATATATATATATA	415	0.12490143320632513	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCC	406	0.122192727425947	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	361	0.10864919852405631	No Hit
AGTCTTTTTTTTTTTCTTTTATAGTAAACACACCCCCACCTCCATCCCAGC	341	0.10262985234543824	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTAC	25	3.8847986E-5	45.000004	33
TACGGGT	25	3.8847986E-5	45.000004	4
GTAATCG	25	3.8847986E-5	45.000004	1
CTAACGG	25	3.8847986E-5	45.000004	2
AATTCGT	25	3.8847986E-5	45.000004	31
TCGTACA	25	3.8847986E-5	45.000004	34
ACCACGG	25	3.8847986E-5	45.000004	2
TAGTAGC	25	3.8847986E-5	45.000004	32
TGATAAG	20	7.0260395E-4	45.0	1
AGCGCTA	20	7.0260395E-4	45.0	25
ATGACGC	20	7.0260395E-4	45.0	2
CATCGGA	20	7.0260395E-4	45.0	31
ATGCGAG	20	7.0260395E-4	45.0	1
TCCCCCG	20	7.0260395E-4	45.0	38
ATCATGC	20	7.0260395E-4	45.0	34
CTGGCGT	20	7.0260395E-4	45.0	17
ACGGTGT	20	7.0260395E-4	45.0	22
CGTATGG	30	2.1608266E-6	44.999996	2
ATGTTAC	60	0.0	44.999996	20
AACACGT	115	0.0	43.04348	41