SRR3553872_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553872_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	511951
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3968	0.7750741770208477	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	2678	0.5230969370115499	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2112	0.4125394813175479	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1105	0.2158409691552512	No Hit
ATATATATATATATATATATATATATATATATATATATATATATATATATA	1056	0.20626974065877396	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCC	816	0.15939025414541627	No Hit
GCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC	812	0.15860892937019364	TruSeq Adapter, Index 13 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	788	0.15392098071885785	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	699	0.1365365044701544	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	627	0.12247265851614705	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	626	0.12227732732234138	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	619	0.1209100089657018	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	569	0.11114344927541893	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCTA	25	3.8877646E-5	45.0	36
AATTTCG	20	7.0296176E-4	45.0	21
GTCGATC	20	7.0296176E-4	45.0	11
CGACGGT	45	3.8380676E-10	45.0	28
GTTTACG	20	7.0296176E-4	45.0	1
ATGTGCG	20	7.0296176E-4	45.0	1
TTCACGA	25	3.8877646E-5	45.0	19
GTTAGGT	20	7.0296176E-4	45.0	34
TCGATTA	35	1.2101555E-7	45.0	41
GAATACG	20	7.0296176E-4	45.0	1
TGTGCGA	20	7.0296176E-4	45.0	20
ATCCGAT	20	7.0296176E-4	45.0	32
CTAACGG	25	3.8877646E-5	45.0	2
GTGTCGA	20	7.0296176E-4	45.0	9
AACGCTA	20	7.0296176E-4	45.0	16
ACTAATG	20	7.0296176E-4	45.0	1
TTAACGG	45	3.8380676E-10	45.0	2
ACGCTAG	20	7.0296176E-4	45.0	1
GTATCCG	20	7.0296176E-4	45.0	30
CGTACCA	20	7.0296176E-4	45.0	45