SRR3553870_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553870_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	275928
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1987	0.7201153924212114	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	1691	0.6128410309935926	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1083	0.3924936940071323	No Hit
ATATATATATATATATATATATATATATATATATATATATATATATATATA	755	0.27362210431706824	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	590	0.2138238960888348	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	489	0.17722014438549186	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCC	345	0.12503261720448813	No Hit
GCTGTCTCTTATACACATCTGACGCCCCGAATATCGTATGCCGTCTTCTGC	339	0.12285813690527964	RNA PCR Primer, Index 40 (95% over 23bp)
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	289	0.1047374677452089	No Hit
CTATATATATATATATATATATATATATATATATATATATATATATATATA	287	0.10401264097880607	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCATGC	20	7.0239574E-4	45.000004	29
ATTAGGT	20	7.0239574E-4	45.000004	41
AGATACG	20	7.0239574E-4	45.000004	42
TAGGTCA	20	7.0239574E-4	45.000004	43
CGCATCG	20	7.0239574E-4	45.000004	21
GCGTTGC	20	7.0239574E-4	45.000004	38
GCGTTAG	20	7.0239574E-4	45.000004	1
TCCTACG	20	7.0239574E-4	45.000004	24
CGTTAGG	20	7.0239574E-4	45.000004	2
GCTTCGA	20	7.0239574E-4	45.000004	24
GTCGTTT	20	7.0239574E-4	45.000004	9
GCGATCT	20	7.0239574E-4	45.000004	9
GAGTTAG	20	7.0239574E-4	45.000004	1
TCGAGGT	20	7.0239574E-4	45.000004	36
TAGGCAC	20	7.0239574E-4	45.000004	10
CGGTACC	20	7.0239574E-4	45.000004	14
CCCGGAT	20	7.0239574E-4	45.000004	41
ACGGTAC	20	7.0239574E-4	45.000004	13
CGGGTAC	25	3.8830753E-5	45.0	6
CAAACGC	25	3.8830753E-5	45.0	34