SRR3553864_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553864_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	255353
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2291	0.8971893809745726	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1110	0.4346923670370037	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	605	0.23692692077242092	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	482	0.18875830712778	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	427	0.16721949614846898	No Hit
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	418	0.16369496344276355	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	394	0.15429620956088239	No Hit
GTCTTAGGGGTTTTCTGCATCTTTATTCTGCTATGGCTGAGTTGAGGTTAG	392	0.1535129800707256	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	370	0.14489745567900122	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC	355	0.1390232345028255	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	292	0.11435150556288745	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	281	0.11004374336702526	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	279	0.10926051387686848	No Hit
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	261	0.10221144846545763	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGGTT	20	7.02297E-4	45.000004	44
TGGACCG	20	7.02297E-4	45.000004	38
GGCCGTA	20	7.02297E-4	45.000004	42
GGCCGAT	20	7.02297E-4	45.000004	8
CCTACAA	20	7.02297E-4	45.000004	16
ATTCGTA	20	7.02297E-4	45.000004	34
TGACGTG	20	7.02297E-4	45.000004	27
GCGTTTA	20	7.02297E-4	45.000004	32
CTGACGT	20	7.02297E-4	45.000004	26
CCATGGT	20	7.02297E-4	45.000004	43
GCGATAG	20	7.02297E-4	45.000004	9
AACTCCT	20	7.02297E-4	45.000004	30
GCCGTAC	20	7.02297E-4	45.000004	43
TGCGTTG	20	7.02297E-4	45.000004	1
CTTCGGA	25	3.8822574E-5	45.0	13
AATCAGG	25	3.8822574E-5	45.0	2
ACGCATT	50	2.1827873E-11	45.0	17
AACCCGA	25	3.8822574E-5	45.0	24
TATGGCC	50	2.1827873E-11	45.0	10
CCGGATT	25	3.8822574E-5	45.0	42