SRR3553861_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553861_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	292244
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4011	1.3724832674066876	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1921	0.6573274387155938	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1220	0.41745938325508825	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	936	0.3202803137104611	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	779	0.266558081603044	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCC	695	0.2378149765264642	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCG	552	0.1888832619318104	No Hit
CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	532	0.18203966548500566	No Hit
GAATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTC	422	0.1443998850275797	No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT	414	0.1416624464488578	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	407	0.13926718769247615	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGC	383	0.13105487195631046	No Hit
GCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	377	0.12900179302226905	No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	352	0.12044729746376315	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	299	0.10231176687973065	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	297	0.10162740723505016	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACAATC	25	3.883642E-5	45.000004	10
GATCCAC	25	3.883642E-5	45.000004	32
CGTCTGG	25	3.883642E-5	45.000004	2
CCTCGTG	25	3.883642E-5	45.000004	15
TAGCCGT	25	3.883642E-5	45.000004	44
TCGTGTA	25	3.883642E-5	45.000004	17
CATAATT	25	3.883642E-5	45.000004	37
ATGCGAG	25	3.883642E-5	45.000004	1
CTTAACG	35	1.2077726E-7	45.0	24
CGTATTA	35	1.2077726E-7	45.0	17
GACACGC	20	7.0246425E-4	45.0	13
GACGTGT	20	7.0246425E-4	45.0	16
CGGCATC	20	7.0246425E-4	45.0	33
CTATACG	20	7.0246425E-4	45.0	2
CGCATCG	20	7.0246425E-4	45.0	21
GCTATAC	20	7.0246425E-4	45.0	1
TCGGGTC	20	7.0246425E-4	45.0	5
CCGGAAT	20	7.0246425E-4	45.0	43
GAATCAT	35	1.2077726E-7	45.0	9
TGAACGA	35	1.2077726E-7	45.0	32