SRR3553860_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553860_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	483103
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4034	0.8350186192178479	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1911	0.39556781887092396	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1152	0.23845846537901855	No Hit
ATATATACATATATATGTATATATACATATATATGTATATATACATATATA	1074	0.22231284011898084	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	940	0.1945754839030186	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCC	850	0.17594591629528278	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	749	0.15503940153549037	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	654	0.13537485794954698	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	630	0.13040697325415077	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	554	0.11467533838539606	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATT	95	0.0	45.000004	17
TACGCAT	95	0.0	45.000004	16
CTACGCA	95	0.0	45.000004	15
CAGTACG	35	1.2099736E-7	45.000004	1
GCGTACA	35	1.2099736E-7	45.000004	24
CGAACAA	25	3.8874372E-5	45.0	38
ATTAGGT	20	7.029222E-4	45.0	15
CTCGTCG	20	7.029222E-4	45.0	35
GTATTAG	20	7.029222E-4	45.0	1
GCGAACC	20	7.029222E-4	45.0	40
CTATATG	20	7.029222E-4	45.0	23
TTATGCA	20	7.029222E-4	45.0	43
TAGAACG	20	7.029222E-4	45.0	1
ACTCTCG	20	7.029222E-4	45.0	1
TCGATTA	25	3.8874372E-5	45.0	41
CCTCGTG	25	3.8874372E-5	45.0	15
CTGACCG	25	3.8874372E-5	45.0	1
CATTAGT	40	6.8012014E-9	45.0	17
TACGAAC	25	3.8874372E-5	45.0	36
AACGATC	25	3.8874372E-5	45.0	24