SRR3553858_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553858_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	556734
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3939	0.7075192102512151	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1959	0.3518736057075731	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1795	0.3224160909877967	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCC	869	0.15608890421637622	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	781	0.14028243290332545	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	629	0.11298034608987417	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	578	0.10381977748799248	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	566	0.10166434958166738	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	30	2.163477E-6	45.000004	10
TCCGCAA	20	7.030148E-4	45.000004	34
CCGGCAC	20	7.030148E-4	45.000004	28
CGCATAC	20	7.030148E-4	45.000004	37
TAGCGCG	40	6.8048394E-9	45.000004	1
TTCCGCA	20	7.030148E-4	45.000004	33
TCGATCC	30	2.163477E-6	45.000004	24
GGCTTCG	40	6.8048394E-9	45.000004	20
CGCCTAA	30	2.163477E-6	45.000004	39
ACGATTA	20	7.030148E-4	45.000004	40
TGCGCAC	20	7.030148E-4	45.000004	1
CTATTAC	20	7.030148E-4	45.000004	21
TATAGCG	30	2.163477E-6	45.000004	1
GCGTGTT	20	7.030148E-4	45.000004	14
TCGCCGG	25	3.888205E-5	45.0	24
TAGCCGT	25	3.888205E-5	45.0	44
GACGGGT	45	3.8380676E-10	45.0	4
GTACGCG	25	3.888205E-5	45.0	1
CTACGCA	115	0.0	43.043476	15
ACGGCCC	95	0.0	42.63158	11