SRR3553855_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553855_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	361641
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3541	0.9791478289242647	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1788	0.4944129675562229	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1010	0.2792824928589402	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	748	0.20683495510741312	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	647	0.17890670582151913	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCC	518	0.14323597158508022	No Hit
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	490	0.13549348663453534	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	423	0.1169668262171601	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	418	0.11558423961884852	No Hit
CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	401	0.11088344518458913	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	60	0.0	45.000004	38
ATTACGG	35	1.2088458E-7	45.000004	2
CGTCTGA	30	2.1613596E-6	45.000004	28
TCGATTA	30	2.1613596E-6	45.000004	41
TCAATGG	60	0.0	45.000004	2
CCGTACT	55	1.8189894E-12	45.000004	44
AATTACG	30	2.1613596E-6	45.000004	1
GCTACTA	30	2.1613596E-6	45.000004	28
GCATCGT	60	0.0	45.000004	35
CGCCAGT	60	0.0	45.000004	26
CATATGG	45	3.8380676E-10	45.0	2
ACGCCAA	20	7.026867E-4	45.0	39
CGAGTAC	20	7.026867E-4	45.0	27
CGAAACT	25	3.8854858E-5	45.0	27
ACGCATG	20	7.026867E-4	45.0	1
GACAATT	20	7.026867E-4	45.0	41
TAGGTCG	25	3.8854858E-5	45.0	28
ACCGAAC	40	6.7921064E-9	45.0	10
GCACGGC	20	7.026867E-4	45.0	37
TTCGTAC	20	7.026867E-4	45.0	33