##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553855_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 361641 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14490060584945 33.0 31.0 34.0 30.0 34.0 2 32.2778446027967 34.0 31.0 34.0 30.0 34.0 3 32.29358120345868 34.0 31.0 34.0 30.0 34.0 4 35.83431082205834 37.0 35.0 37.0 35.0 37.0 5 35.759432697066984 37.0 35.0 37.0 35.0 37.0 6 35.72460810582871 37.0 35.0 37.0 33.0 37.0 7 35.77596566760959 37.0 35.0 37.0 35.0 37.0 8 35.67724898449014 37.0 35.0 37.0 35.0 37.0 9 37.51697125049427 39.0 37.0 39.0 35.0 39.0 10 37.0201442867374 39.0 37.0 39.0 33.0 39.0 11 36.96541044848344 39.0 37.0 39.0 33.0 39.0 12 36.83384074261491 39.0 35.0 39.0 33.0 39.0 13 36.746027137409754 39.0 35.0 39.0 33.0 39.0 14 37.89562024217387 40.0 37.0 41.0 33.0 41.0 15 38.001122660317826 40.0 37.0 41.0 33.0 41.0 16 38.095589272234065 40.0 37.0 41.0 33.0 41.0 17 38.016264748742536 40.0 37.0 41.0 33.0 41.0 18 37.94781565143333 40.0 36.0 41.0 33.0 41.0 19 37.84607939918317 40.0 36.0 41.0 33.0 41.0 20 37.73257456980818 39.0 35.0 41.0 33.0 41.0 21 37.621279113817295 39.0 35.0 41.0 33.0 41.0 22 37.54441559447076 39.0 35.0 41.0 33.0 41.0 23 37.468284846021334 39.0 35.0 41.0 33.0 41.0 24 37.44589247347508 39.0 35.0 41.0 33.0 41.0 25 37.28948598195448 39.0 35.0 41.0 32.0 41.0 26 37.25300781714463 39.0 35.0 41.0 33.0 41.0 27 37.21498392051786 39.0 35.0 41.0 32.0 41.0 28 37.05673029330192 39.0 35.0 41.0 32.0 41.0 29 36.87751112290918 39.0 35.0 41.0 31.0 41.0 30 36.7615480545624 39.0 35.0 41.0 31.0 41.0 31 36.668851153492 39.0 35.0 41.0 31.0 41.0 32 36.557682895468155 39.0 35.0 41.0 31.0 41.0 33 36.43951321891046 39.0 35.0 41.0 30.0 41.0 34 36.34882106840762 39.0 35.0 41.0 30.0 41.0 35 36.188244695706516 39.0 35.0 41.0 30.0 41.0 36 36.056752414687494 38.0 35.0 41.0 30.0 41.0 37 35.949071040064595 38.0 35.0 40.0 29.0 41.0 38 35.81173594808111 38.0 35.0 40.0 29.0 41.0 39 35.73044262127358 38.0 35.0 40.0 28.0 41.0 40 35.5967050196189 38.0 35.0 40.0 28.0 41.0 41 35.441611985366706 38.0 34.0 40.0 27.0 41.0 42 35.32843068125572 38.0 34.0 40.0 27.0 41.0 43 35.18614592925028 38.0 34.0 40.0 26.0 41.0 44 35.04597929991345 37.0 34.0 40.0 26.0 41.0 45 34.95621071725827 37.0 34.0 40.0 26.0 41.0 46 34.77638320876228 37.0 34.0 40.0 25.0 41.0 47 34.67289383670546 37.0 34.0 40.0 24.0 41.0 48 34.521884963264675 37.0 34.0 40.0 24.0 41.0 49 34.43896294944434 36.0 34.0 40.0 24.0 41.0 50 34.30010701220271 36.0 33.0 40.0 24.0 41.0 51 32.87967072317575 35.0 31.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 1.0 10 1.0 11 0.0 12 0.0 13 6.0 14 10.0 15 15.0 16 48.0 17 93.0 18 190.0 19 340.0 20 585.0 21 900.0 22 1313.0 23 1827.0 24 2472.0 25 3077.0 26 3811.0 27 4642.0 28 5252.0 29 6267.0 30 7222.0 31 9101.0 32 11506.0 33 15696.0 34 25970.0 35 35492.0 36 30451.0 37 42356.0 38 64745.0 39 88213.0 40 36.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.33634737211765 19.96233834106199 22.859963333803414 13.841350953016942 2 29.96369327592834 27.30608531665381 25.21450831072804 17.51571309668981 3 31.21133942224471 28.00816279127643 25.245478250530223 15.535019535948635 4 26.086920454262653 29.20354716417663 24.349838652143976 20.35969372941674 5 23.59135164431024 32.533092210230585 24.559438780448016 19.316117365011156 6 22.660870863646547 37.71281464214511 25.273406499816115 14.352907994392227 7 79.75036016380886 9.130048860610385 7.34430001023114 3.7752909653496145 8 82.18537168075522 7.107048149960874 6.728219422023499 3.979360747260405 9 76.88038690303367 10.199341335744565 8.349993501842988 4.570278259378776 10 38.50199507246136 28.501469689554003 16.452504002588203 16.544031235396428 11 30.324271860767997 29.105660033016168 21.646605335125166 18.92346277109067 12 26.82135045528577 24.571329025193492 28.66903918526937 19.93828133425137 13 24.774569255145295 27.635693961691288 27.611913472200335 19.977823310963082 14 20.691514513011523 30.710566556336254 28.26062310412813 20.337295826524095 15 19.75412079935627 28.985651516282722 30.401420192953786 20.858807491407223 16 22.237799364563198 24.86830862651082 30.76891171078501 22.124980298140976 17 20.895584294922312 24.74359931534312 27.084041908964966 27.276774480769607 18 23.182382528529676 26.184254550783788 27.463147154222007 23.170215766464533 19 24.64156442438772 28.3554685447723 24.51381342270373 22.489153608136245 20 24.551419778177806 27.20985728941132 24.834296996192357 23.404425936218516 21 25.158375294836592 27.993230856014666 25.440422960892157 21.407970888256585 22 23.036934418387293 26.23928149739659 25.345024485608658 25.37875959860746 23 21.352943941643783 29.748009766591732 23.961884852657747 24.937161439106738 24 22.295868001692288 27.910275660115975 27.679107180878276 22.11474915731347 25 22.245818366833404 29.16289911818627 24.994400524276838 23.596881990703487 26 19.796427949264604 29.997981423566465 25.09477631131426 25.110814315854675 27 22.426937211212223 28.250668480620284 25.77528543500322 23.547108873164273 28 21.83546666445453 28.29961204620051 27.60583009116776 22.2590911981772 29 22.501873404840712 28.37924903426326 26.94163548933887 22.177242071557153 30 23.585821297916993 28.70719857538277 26.491188775608958 21.215791351091276 31 24.948222131893232 30.305192165711297 23.57669622636814 21.169889476027333 32 24.115351965070335 29.68385774843007 24.297023844088475 21.903766442411122 33 23.8844600031523 28.261452656087116 24.04013925412218 23.813948086638405 34 22.033176548013085 29.638232390685793 25.111090833174337 23.217500228126788 35 23.440373187774615 28.869237724704888 24.573264646431127 23.117124441089366 36 24.367535760602365 29.124463210753206 24.018017868549197 22.489983160095235 37 23.105787230983214 29.243918692847327 24.684701126255042 22.965592949914416 38 23.81947843303165 29.456283994347988 24.04124532340083 22.68299224921953 39 24.218769442624037 28.375101274468328 24.06115457041652 23.34497471249112 40 24.556950124571053 26.44418083126637 26.667883342873182 22.3309857012894 41 21.38944422783921 26.304816102156558 25.95806338330001 26.347676286704218 42 22.182495900630737 27.360559228627285 25.39673322438551 25.060211646356468 43 22.665295140761142 26.875824367259245 25.78745219706836 24.67142829491125 44 22.485835400300296 26.828263388277325 26.4842758426174 24.201625368804976 45 23.237409475142474 27.38046847564297 25.5054045310128 23.876717518201755 46 23.388664448997762 28.218592471539456 24.962877549835333 23.42986552962745 47 22.56574890568271 27.28368741376116 26.28269471658357 23.86786896397256 48 21.659325131829632 28.067890532323492 25.669932336211875 24.602851999634996 49 23.144223138416276 26.3551422543351 27.03039754895048 23.470237058298146 50 22.189685350941957 25.92626389153885 27.836169018446473 24.047881739072725 51 22.15788585918079 27.286452586957783 25.61020459516482 24.945456958696607 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4373.0 1 4125.0 2 3877.0 3 3311.0 4 2745.0 5 2023.5 6 1302.0 7 1371.0 8 1440.0 9 1598.0 10 1756.0 11 1655.0 12 1554.0 13 1439.0 14 1324.0 15 1374.0 16 1424.0 17 1396.0 18 1368.0 19 1253.0 20 1138.0 21 1246.0 22 1354.0 23 1651.0 24 1948.0 25 2076.5 26 2744.0 27 3283.0 28 3272.5 29 3262.0 30 4018.5 31 4775.0 32 5447.0 33 6119.0 34 7060.5 35 8002.0 36 8818.0 37 9634.0 38 10236.0 39 10838.0 40 12081.5 41 13325.0 42 15206.0 43 17087.0 44 19026.5 45 20966.0 46 22479.5 47 23993.0 48 25940.5 49 27888.0 50 28813.5 51 29739.0 52 27386.5 53 25034.0 54 22429.0 55 19824.0 56 19305.0 57 18786.0 58 18259.5 59 17733.0 60 16645.5 61 15558.0 62 14251.0 63 12944.0 64 11683.0 65 10422.0 66 9319.5 67 8217.0 68 7419.5 69 6622.0 70 6175.5 71 5729.0 72 5286.0 73 4843.0 74 4157.5 75 2885.5 76 2299.0 77 1945.5 78 1592.0 79 1212.5 80 833.0 81 697.5 82 562.0 83 397.0 84 232.0 85 191.5 86 151.0 87 98.0 88 45.0 89 27.0 90 9.0 91 5.0 92 1.0 93 1.0 94 1.0 95 3.5 96 6.0 97 6.0 98 6.0 99 3.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 361641.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.992317187192928 #Duplication Level Percentage of deduplicated Percentage of total 1 76.00827558135005 21.276477589247214 2 8.108612757985377 4.539577205392918 3 3.089747483097851 2.594675747256182 4 1.6746640309421956 1.8751090694446808 5 1.0997728257371804 1.5392594885945303 6 0.8398262718017739 1.4105210029447774 7 0.6968558365997001 1.3654626728291845 8 0.5958767264055697 1.334397626400871 9 0.5198924458378846 1.3097694822407628 >10 6.482658882319757 42.842895602340455 >50 0.812831843202641 14.350091923453789 >100 0.06498655572960844 3.2523143489508826 >500 0.002999379495212698 0.5353822691285637 >1k 0.002999379495212698 1.7740659717752036 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3541 0.9791478289242647 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1788 0.4944129675562229 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1010 0.2792824928589402 No Hit ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC 748 0.20683495510741312 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 647 0.17890670582151913 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCC 518 0.14323597158508022 No Hit GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC 490 0.13549348663453534 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 423 0.1169668262171601 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 418 0.11558423961884852 No Hit CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC 401 0.11088344518458913 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.7651731966231707E-4 0.0 0.0 0.07521271094815024 0.0 2 5.530346393246341E-4 0.0 0.0 0.41726463537043645 0.0 3 5.530346393246341E-4 0.0 0.0 0.5643718494307891 0.0 4 5.530346393246341E-4 0.0 0.0 0.7490854189652169 0.0 5 5.530346393246341E-4 0.0 0.0 1.427658921416543 0.0 6 5.530346393246341E-4 0.0 0.0 2.0694556203527807 0.0 7 5.530346393246341E-4 0.0 0.0 2.5436828235736546 0.0 8 5.530346393246341E-4 0.0 0.0 3.31046535099726 0.0 9 5.530346393246341E-4 0.0 0.0 3.684316767180712 0.0 10 5.530346393246341E-4 0.0 0.0 4.382522999328063 0.0 11 5.530346393246341E-4 0.0 0.0 5.182764122430808 0.0 12 5.530346393246341E-4 0.0 0.0 5.850276932095642 0.0 13 5.530346393246341E-4 0.0 0.0 6.197029650952188 0.0 14 5.530346393246341E-4 0.0 0.0 6.367640837183837 0.0 15 5.530346393246341E-4 0.0 0.0 6.545717991046369 0.0 16 5.530346393246341E-4 0.0 0.0 6.907679162484342 0.0 17 5.530346393246341E-4 0.0 0.0 7.348724287345738 0.0 18 5.530346393246341E-4 0.0 0.0 7.918349965850111 0.0 19 5.530346393246341E-4 0.0 0.0 8.165832966947885 0.0 20 5.530346393246341E-4 0.0 0.0 8.41469855464397 0.0 21 5.530346393246341E-4 0.0 0.0 8.678496077601821 0.0 22 5.530346393246341E-4 0.0 0.0 8.972710505722526 0.0 23 5.530346393246341E-4 0.0 0.0 9.28711069817858 0.0 24 5.530346393246341E-4 0.0 0.0 9.5423361842269 0.0 25 5.530346393246341E-4 0.0 0.0 9.759678797481481 0.0 26 5.530346393246341E-4 0.0 0.0 9.94107415917996 0.0 27 5.530346393246341E-4 0.0 0.0 10.149291700885685 0.0 28 5.530346393246341E-4 0.0 0.0 10.379907145484058 0.0 29 5.530346393246341E-4 0.0 0.0 10.608586968844794 0.0 30 5.530346393246341E-4 0.0 0.0 10.865195041491424 0.0 31 5.530346393246341E-4 0.0 0.0 11.083920241344316 0.0 32 5.530346393246341E-4 0.0 0.0 11.331956277081416 0.0 33 5.530346393246341E-4 0.0 0.0 11.585246141892098 0.0 34 5.530346393246341E-4 0.0 0.0 11.833005660309533 0.0 35 5.530346393246341E-4 0.0 0.0 12.100674425742657 0.0 36 5.530346393246341E-4 0.0 0.0 12.374703089528012 0.0 37 5.530346393246341E-4 0.0 0.0 12.62246260794545 0.0 38 5.530346393246341E-4 0.0 0.0 12.87907068059208 0.0 39 5.530346393246341E-4 0.0 0.0 13.132637062722424 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 60 0.0 45.000004 38 ATTACGG 35 1.2088458E-7 45.000004 2 CGTCTGA 30 2.1613596E-6 45.000004 28 TCGATTA 30 2.1613596E-6 45.000004 41 TCAATGG 60 0.0 45.000004 2 CCGTACT 55 1.8189894E-12 45.000004 44 AATTACG 30 2.1613596E-6 45.000004 1 GCTACTA 30 2.1613596E-6 45.000004 28 GCATCGT 60 0.0 45.000004 35 CGCCAGT 60 0.0 45.000004 26 CATATGG 45 3.8380676E-10 45.0 2 ACGCCAA 20 7.026867E-4 45.0 39 CGAGTAC 20 7.026867E-4 45.0 27 CGAAACT 25 3.8854858E-5 45.0 27 ACGCATG 20 7.026867E-4 45.0 1 GACAATT 20 7.026867E-4 45.0 41 TAGGTCG 25 3.8854858E-5 45.0 28 ACCGAAC 40 6.7921064E-9 45.0 10 GCACGGC 20 7.026867E-4 45.0 37 TTCGTAC 20 7.026867E-4 45.0 33 >>END_MODULE