SRR3553850_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553850_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	866404
Sequences flagged as poor quality	0
Sequence length	46
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17496	2.019381258627615	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10072	1.1625061749484074	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	3184	0.3674959949400049	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGC	1702	0.19644415307408553	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTC	1513	0.17462984935434278	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCC	1432	0.1652808620458816	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGT	1146	0.13227085747526557	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	959	0.11068739294832433	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATG	937	0.10814816182750772	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	0.0012555975	40.000004	1
CGTATGA	20	0.0012555975	40.000004	28
TACGCTG	20	0.0012555975	40.000004	1
CCGTACT	20	0.0012555975	40.000004	11
TCGTAAG	20	0.0012555975	40.000004	1
GCGGATA	20	0.0012555975	40.000004	5
CGACTAT	20	0.0012555975	40.000004	30
GCCGTAC	20	0.0012555975	40.000004	10
CAGACCG	20	0.0012555975	40.000004	1
CCTAGCG	25	7.7930636E-5	40.0	1
GTATACG	25	7.7930636E-5	40.0	1
ACGCATT	380	0.0	39.473682	17
CGCTACA	395	0.0	38.987343	28
CGTTTTT	7285	0.0	38.764587	1
TACGCAT	395	0.0	38.48101	16
CTACGCA	405	0.0	38.02469	15
CGCATTT	390	0.0	37.94872	18
TCTACGC	415	0.0	37.59036	14
TCACCGC	415	0.0	37.108433	24
CCGCTAC	410	0.0	37.07317	27