SRR3553848_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553848_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	975750
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12184	1.248680502177812	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8520	0.8731744811683321	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	4647	0.4762490392006149	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCG	3053	0.3128875224186523	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTCCATATCG	1566	0.16049192928516526	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTCCATATCGTA	1560	0.15987701767870868	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGC	1463	0.14993594670766078	No Hit
GCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCT	1379	0.14132718421726878	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCC	1236	0.1266717909300538	No Hit
CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTT	1219	0.12492954137842685	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1208	0.12380220343325646	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTC	1188	0.12175249807840124	No Hit
CCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCT	1143	0.11714066102997693	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGT	1024	0.10494491416858827	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGT	983	0.10074301819113503	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTAAC	20	0.0012556753	40.000004	12
TCGTTAG	30	4.866759E-6	40.0	1
TATATCG	25	7.7937875E-5	40.0	1
CCGTAAG	30	4.866759E-6	40.0	1
CACGTCG	30	4.866759E-6	40.0	1
AATAGCG	30	4.866759E-6	40.0	1
ATTTCGC	25	7.7937875E-5	40.0	34
ACGCATT	555	0.0	38.918922	17
TACGCAT	565	0.0	38.58407	16
CGCATTT	570	0.0	37.894733	18
CGTTTTT	4070	0.0	37.10074	1
TCACCGC	585	0.0	36.923077	24
TTCACCG	585	0.0	36.923077	23
CTACGCA	605	0.0	36.36364	15
GCGTAAG	55	2.1645974E-10	36.363636	1
CTTGACG	50	3.423338E-9	36.0	1
CACCGCT	605	0.0	35.70248	25
TAAGACG	45	5.441143E-8	35.555557	1
GCCCGAA	45	5.441143E-8	35.555557	25
GCGATTA	160	0.0	35.000004	9