SRR3553845_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553845_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	688294
Sequences flagged as poor quality	0
Sequence length	46
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4929	0.7161184028917875	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	4827	0.7012991541405272	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3565	0.5179472725317961	No Hit
CCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCT	1575	0.2288266351297556	No Hit
CTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTT	1067	0.15502096487838046	RNA PCR Primer, Index 36 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCT	1067	0.15502096487838046	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	859	0.1248013203660064	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGACAATCTCGT	712	0.10344416775389587	No Hit
CGCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTC	703	0.10213658698172584	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATTA	30	4.8646634E-6	40.000004	34
TAACACG	30	4.8646634E-6	40.000004	1
AACGTCC	20	0.0012554179	40.0	26
GGTACGC	25	7.791391E-5	40.0	8
CAACGTT	20	0.0012554179	40.0	18
CAACGCG	25	7.791391E-5	40.0	1
CGTTGAT	70	0.0	40.0	25
CGTTCGG	25	7.791391E-5	40.0	2
CGCTCGT	25	7.791391E-5	40.0	13
CTACGCG	40	1.9263098E-8	40.0	1
CGCTACA	660	0.0	39.69697	28
TACGCAT	675	0.0	39.407406	16
CGCATTT	685	0.0	38.83212	18
CTACGCA	680	0.0	38.82353	15
TCTACGC	695	0.0	38.561153	14
CACCGCT	695	0.0	38.561153	25
CGTTTTT	1520	0.0	38.28948	1
CCGCTAC	685	0.0	38.248177	27
TTCACCG	705	0.0	38.014183	23
CGAATAT	100	0.0	38.0	14