SRR3553843_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553843_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	459984
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	7269	1.5802723572993844	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5609	1.2193902396605099	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2038	0.4430588890048349	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1236	0.26870499843472817	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	909	0.19761556923719087	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	788	0.1713103064454416	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTT	759	0.16500573933006366	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATGAGTCGT	733	0.15935336881282827	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGA	502	0.10913423075585237	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	471	0.10239486590837943	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGCG	30	4.861138E-6	40.000004	1
CCGTAAG	30	4.861138E-6	40.000004	1
TTAGTGG	30	4.861138E-6	40.000004	2
TCGCCCT	25	7.7873556E-5	40.0	28
TCGTTCA	65	0.0	40.0	16
TCGCAAC	20	0.001254984	40.0	15
CGAAAGG	40	1.9239451E-8	40.0	2
TCCGATC	20	0.001254984	40.0	15
CGTGCGG	50	7.8216544E-11	40.0	2
GCAACCC	20	0.001254984	40.0	22
TTCCGAT	20	0.001254984	40.0	14
GCGTTTA	25	7.7873556E-5	40.0	32
CGACAGG	20	0.001254984	40.0	2
CGTTCAT	65	0.0	40.0	17
TGGCCGT	20	0.001254984	40.0	20
ATCGTCC	20	0.001254984	40.0	35
TCTACGT	35	3.0510455E-7	40.0	27
CTAAACG	35	3.0510455E-7	40.0	1
TTAAACG	20	0.001254984	40.0	1
GACATAG	25	7.7873556E-5	40.0	21