SRR3553841_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553841_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	370385
Sequences flagged as poor quality	0
Sequence length	46
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7941	2.143985312580153	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3660	0.9881609676417781	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	3119	0.8420967371788814	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1063	0.28699866355278963	No Hit
CCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCT	897	0.24218043387286203	No Hit
CGCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTC	896	0.24191044453744076	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCC	580	0.1565938145443255	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCG	557	0.15038405982963673	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	534	0.14417430511494794	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGC	532	0.14363432644410545	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCACCGTATCGT	476	0.1285149236605154	No Hit
GCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCT	380	0.10259594746007533	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTTGCG	20	0.001254667	40.000004	1
TAGCCGA	20	0.001254667	40.000004	18
CTACGCG	20	0.001254667	40.000004	1
AAGCACG	40	1.922308E-8	40.000004	1
GTACTCG	20	0.001254667	40.000004	15
CTCGCAT	20	0.001254667	40.000004	21
CGTCGTC	20	0.001254667	40.000004	15
ACGTAAG	20	0.001254667	40.000004	1
GCTACGA	20	0.001254667	40.000004	10
CGCGTTT	20	0.001254667	40.000004	22
CAGTAAT	20	0.001254667	40.000004	11
GATTACC	20	0.001254667	40.000004	30
GGTTACA	40	1.922308E-8	40.000004	8
ACGACCA	80	0.0	40.000004	28
CACGACC	75	0.0	40.0	27
ATGTCGG	25	7.784413E-5	40.0	33
CGTTCAG	30	4.8585716E-6	40.0	38
TATTGCG	25	7.784413E-5	40.0	1
CCCGTAA	25	7.784413E-5	40.0	33
ACTACGG	25	7.784413E-5	40.0	2