SRR3553837_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553837_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	558211
Sequences flagged as poor quality	0
Sequence length	46
%GC	46

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10787	1.932423402620156	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6516	1.1673005368937552	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	3645	0.6529788914944349	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1279	0.22912482914166865	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC	1155	0.20691100676984153	No Hit
CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCT	1124	0.20135755117688475	No Hit
CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTT	1072	0.19204207727902173	No Hit
CGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTC	1056	0.1891757776181408	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCC	973	0.17430684812732103	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGT	874	0.15657161897562033	No Hit
GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCT	847	0.15173473829788378	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATG	672	0.1203845857569987	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCG	649	0.11626427999448237	No Hit
CGTCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGT	642	0.11501027389284697	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	25	7.789496E-5	40.0	1
GTCGCTA	35	3.0526098E-7	40.0	22
TCGTTCA	35	3.0526098E-7	40.0	16
CACGACC	120	0.0	40.0	27
CCTAACG	20	0.0012552142	40.0	1
CCGTATT	20	0.0012552142	40.0	16
CTAGTAG	20	0.0012552142	40.0	1
TGCGACG	25	7.789496E-5	40.0	1
ACTAACG	30	4.86301E-6	40.0	1
CGTACGG	45	1.2187229E-9	40.0	2
TCCGTAT	20	0.0012552142	40.0	15
CGTACAT	20	0.0012552142	40.0	35
TCGTAAG	30	4.86301E-6	40.0	1
ATGCGCT	20	0.0012552142	40.0	12
TTACGCG	30	4.86301E-6	40.0	1
TTACGAG	30	4.86301E-6	40.0	1
CGGTCTA	20	0.0012552142	40.0	31
TTGCACG	30	4.86301E-6	40.0	1
GGTTCGC	25	7.789496E-5	40.0	10
GCATGCG	45	1.2187229E-9	40.0	1