SRR3553831_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553831_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	509605
Sequences flagged as poor quality	0
Sequence length	46
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3222	0.6322543931083878	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2566	0.5035272416871891	No Hit
CCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCT	1093	0.21447984223074734	No Hit
CTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTT	953	0.1870075843054915	No Hit
GCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCT	748	0.1467803494863669	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTCCGATCGT	731	0.1434444324525858	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	605	0.11871940031985558	No Hit
CCACCAGGGAGTAAAACTAATGACTTTTTTTTTTAATGAAATGTTT	560	0.10988903170102333	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	30	4.8621732E-6	40.000004	14
ACTAACG	30	4.8621732E-6	40.000004	1
TTGATCG	25	7.788541E-5	40.0	37
TCGTTGA	20	0.0012551112	40.0	24
AGTCACG	20	0.0012551112	40.0	1
GATCGCC	20	0.0012551112	40.0	9
AACCCGA	20	0.0012551112	40.0	24
TTAGATC	20	0.0012551112	40.0	13
TTTCGCG	25	7.788541E-5	40.0	1
CTATACG	25	7.788541E-5	40.0	1
TAAACGG	20	0.0012551112	40.0	2
TCTACGG	45	1.2187229E-9	40.0	2
TTAACGG	50	7.8216544E-11	40.0	2
CTATTAG	25	7.788541E-5	40.0	1
TAGATCG	20	0.0012551112	40.0	14
GACGCTT	20	0.0012551112	40.0	9
ATCGGGT	20	0.0012551112	40.0	4
TATACGT	20	0.0012551112	40.0	16
CGCTTAT	20	0.0012551112	40.0	11
AAGTCGT	25	7.788541E-5	40.0	25