##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553829_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 333621 Sequences flagged as poor quality 0 Sequence length 46 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.803927210817065 31.0 31.0 34.0 30.0 34.0 2 31.949139892272967 33.0 31.0 34.0 30.0 34.0 3 31.920148911489385 33.0 31.0 34.0 30.0 34.0 4 35.69032524930984 37.0 35.0 37.0 33.0 37.0 5 35.488440475869325 37.0 35.0 37.0 33.0 37.0 6 35.482373711486986 37.0 35.0 37.0 33.0 37.0 7 35.74904757194541 37.0 35.0 37.0 35.0 37.0 8 35.49039778671007 37.0 35.0 37.0 33.0 37.0 9 37.27875343578492 39.0 37.0 39.0 34.0 39.0 10 36.86075217087653 39.0 37.0 39.0 32.0 39.0 11 36.87106327239592 39.0 37.0 39.0 33.0 39.0 12 36.935135977651285 39.0 37.0 39.0 33.0 39.0 13 35.24291336576535 39.0 35.0 39.0 30.0 39.0 14 37.064819061150224 40.0 36.0 41.0 31.0 41.0 15 37.655828020418376 40.0 36.0 41.0 32.0 41.0 16 37.85607320882079 40.0 37.0 41.0 33.0 41.0 17 37.863473822091535 39.0 37.0 41.0 33.0 41.0 18 37.848049133597705 39.0 37.0 41.0 33.0 41.0 19 37.800857859667104 39.0 37.0 41.0 33.0 41.0 20 37.74316964459671 39.0 36.0 41.0 33.0 41.0 21 37.622349912025925 39.0 36.0 41.0 33.0 41.0 22 37.60898744383597 39.0 36.0 41.0 33.0 41.0 23 37.52800932794998 39.0 36.0 41.0 33.0 41.0 24 37.49434238252388 39.0 36.0 41.0 32.0 41.0 25 37.29880313289631 39.0 35.0 41.0 32.0 41.0 26 37.2841667640826 39.0 35.0 41.0 32.0 41.0 27 37.27160460522569 39.0 35.0 41.0 32.0 41.0 28 37.14953195392376 39.0 35.0 41.0 32.0 41.0 29 37.034521208197326 39.0 35.0 41.0 31.0 41.0 30 36.92916213307915 39.0 35.0 41.0 31.0 41.0 31 36.87466916051448 39.0 35.0 41.0 31.0 41.0 32 36.7496200778728 39.0 35.0 40.0 31.0 41.0 33 36.62698990770965 39.0 35.0 40.0 31.0 41.0 34 36.4899002161135 39.0 35.0 40.0 30.0 41.0 35 36.42776683721948 39.0 35.0 40.0 30.0 41.0 36 36.30000809301573 39.0 35.0 40.0 30.0 41.0 37 36.20090761672677 39.0 35.0 40.0 30.0 41.0 38 36.123340557099226 39.0 35.0 40.0 30.0 41.0 39 36.02721051732355 39.0 35.0 40.0 29.0 41.0 40 35.907107166515296 38.0 35.0 40.0 29.0 41.0 41 35.783721648217586 38.0 35.0 40.0 29.0 41.0 42 35.725760668543046 38.0 35.0 40.0 29.0 41.0 43 35.628440655714115 38.0 35.0 40.0 28.0 41.0 44 35.492460007013946 38.0 35.0 40.0 28.0 41.0 45 35.45752815320378 38.0 35.0 40.0 28.0 41.0 46 34.50118847434664 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 7.0 10 17.0 11 16.0 12 20.0 13 10.0 14 15.0 15 11.0 16 29.0 17 34.0 18 80.0 19 161.0 20 316.0 21 534.0 22 830.0 23 1168.0 24 1601.0 25 2114.0 26 2920.0 27 3407.0 28 4284.0 29 5107.0 30 6323.0 31 7860.0 32 10694.0 33 14360.0 34 21221.0 35 28207.0 36 34412.0 37 48431.0 38 71937.0 39 67491.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.17224635139875 23.847719418142145 21.609850698846895 19.370183531612216 2 25.320948021857138 29.872819756550093 22.941601397993534 21.864630823599235 3 27.758144721105687 28.972696562866247 22.69041816912005 20.578740546908016 4 24.46278861342661 29.198102037941258 22.326532202709064 24.01257714592307 5 21.855638583902092 33.31894574981791 20.4651385854008 24.3602770808792 6 19.826389825580524 41.87446233900144 21.24866240434505 17.050485431072985 7 78.85744602408121 7.658690550055303 8.716777421085602 4.767086004777877 8 77.30748364161728 8.31722223720929 8.356488350553471 6.018805770619955 9 69.9767100991844 10.294316005287437 12.179389187131505 7.549584708396654 10 32.826470755737795 29.332386150751898 18.037533608495867 19.80360948501443 11 26.396419889635247 29.536509991877008 24.53502627232698 19.53204384616076 12 22.686521531917954 25.11472599146936 30.72318589057643 21.47556658603625 13 22.969777082377906 27.03756658004142 31.33256000071938 18.66009633686129 14 20.90815626114663 28.616304129536207 28.37111572712749 22.104423882189668 15 18.828251219197835 29.07011249291861 32.091205289834875 20.010430998048683 16 20.87458523294397 28.08456302211192 28.853699257540743 22.187152487403374 17 20.491815563168984 27.809700228702628 27.798310058419585 23.9001741497088 18 21.394036946115502 27.10920475629532 28.951115187593107 22.545643109996075 19 23.74400892030178 28.920241831299588 26.25494198506689 21.080807263331742 20 25.58472038630662 26.8664142844725 26.005856945456074 21.54300838376481 21 25.365609479019607 29.003569919159766 25.42166110646512 20.209159495355507 22 23.014138798217136 27.72547291687274 24.27185339052398 24.988534894386145 23 21.6059540616448 29.0629187011609 26.201588029530516 23.129539207663786 24 21.66710129158536 27.729969036721307 26.4000167855141 24.202912886179227 25 22.421250460852285 29.262846163760674 25.31855009127123 22.997353284115807 26 20.285293791457974 28.99247949019996 27.964666492816697 22.75756022552537 27 23.359740543910608 27.46619667227183 26.888894883715352 22.285167900102213 28 21.502843046450913 27.72337472761007 27.853762203218622 22.92002002272039 29 22.89693994083106 28.085462246081633 26.264233966087268 22.75336384700004 30 23.430179754871546 26.51571693628399 26.023241942203878 24.030861366640586 31 23.169704544977684 28.53957035078727 24.517641275579173 23.77308382865587 32 24.8416616459995 26.61013545310397 26.394921183019054 22.15328171787747 33 24.79939811942294 26.968326334373437 23.83123364536405 24.401041900839576 34 22.77764289418232 27.003695810515527 28.06837699065706 22.15028430464509 35 24.724163047290187 25.993867292526552 25.779552246411345 23.502417413771916 36 23.954127587891648 27.949979167978036 26.391923769786672 21.70396947434364 37 26.166518294711665 27.561814154384766 26.061608831578347 20.21005871932522 38 22.758759190818324 27.83877513705672 27.176946295347115 22.225519376777843 39 25.562239787063763 25.033196351548614 25.367108185635797 24.037455675751826 40 23.38641752167879 25.956099885798555 28.91664493542073 21.74083765710192 41 21.714160679333734 26.703055263307768 28.140914390880674 23.441869666477828 42 23.65018988612827 26.200089322914327 28.800944784650845 21.348776006306558 43 25.031397903609186 25.107232458388413 28.22244403080142 21.638925607200985 44 23.546479388287906 25.8083274134422 27.181442415195683 23.463750783074207 45 24.13037548595562 24.09500600981353 27.754248083903594 24.020370420327257 46 23.542283009762574 25.580823749104525 27.10920475629532 23.767688484837585 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3847.0 1 3296.0 2 2745.0 3 2691.5 4 2638.0 5 1969.5 6 1301.0 7 1301.0 8 1231.5 9 1162.0 10 1188.5 11 1215.0 12 1249.0 13 1283.0 14 1223.0 15 1163.0 16 1189.0 17 1215.0 18 1149.0 19 1083.0 20 1083.0 21 1017.5 22 952.0 23 1212.0 24 1472.0 25 2306.5 26 3141.0 27 3097.5 28 3054.0 29 4430.5 30 5807.0 31 5807.0 32 5948.5 33 6090.0 34 6509.5 35 6929.0 36 8322.0 37 9715.0 38 10153.5 39 10592.0 40 12761.0 41 14930.0 42 17248.5 43 19567.0 44 19567.0 45 22593.0 46 25619.0 47 28909.5 48 32200.0 49 32399.5 50 32599.0 51 29696.5 52 26794.0 53 24195.0 54 21596.0 55 19667.0 56 17738.0 57 17738.0 58 17466.0 59 17194.0 60 15958.5 61 14723.0 62 13434.0 63 12145.0 64 10627.5 65 9110.0 66 8377.5 67 7645.0 68 6706.5 69 5768.0 70 5768.0 71 4990.0 72 4212.0 73 3393.0 74 2574.0 75 2136.0 76 1698.0 77 1470.5 78 1243.0 79 867.5 80 492.0 81 492.0 82 368.5 83 245.0 84 152.5 85 60.0 86 54.0 87 48.0 88 30.0 89 12.0 90 8.0 91 4.0 92 2.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 333621.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.907980883310483 #Duplication Level Percentage of deduplicated Percentage of total 1 73.22546820822399 22.632513715512466 2 10.171151052993809 6.2873948461439175 3 3.782107740078892 3.50691941186937 4 2.009766536530025 2.484713027639485 5 1.27542490924437 1.9710404356511497 6 0.9248454531955979 1.7151063352431697 7 0.7161049959632881 1.5493351667973505 8 0.6112359671425729 1.5113655670107549 9 0.5303370800696044 1.4752483499251832 >10 6.343071164928629 43.88640028825467 >50 0.35655430732757704 6.877701018612569 >100 0.04194756556795024 2.3750911865890982 >500 0.008988764050275051 1.9580456715017742 >1k 0.0029962546834250174 1.7691249792490409 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3558 1.066479628080966 No Hit CCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCT 1154 0.3459014870167046 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1019 0.3054364083795684 No Hit GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCT 883 0.26467158841919425 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 873 0.2616741751868138 No Hit CTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTT 806 0.24159150652986475 No Hit GAATCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCG 755 0.22630469904472442 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTA 697 0.20891970229691775 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 635 0.19033574025615893 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGCATGTCG 606 0.1816432418822556 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGT 548 0.16425824513444898 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 540 0.1618603145485446 No Hit ACTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCT 474 0.1420773872148336 No Hit GATCCGGGGAGTTGGGAGTTCCTATTTTAGGCAGAAGGGATTCTTT 411 0.12319368385083672 No Hit TCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCT 370 0.11090428959807686 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.26467158841919425 0.0 2 0.0 0.0 0.0 1.177683659002281 0.0 3 0.0 0.0 0.0 1.5151923889683203 0.0 4 0.0 0.0 0.0 1.9504167903099625 0.0 5 0.0 0.0 0.0 3.164069408100809 0.0 6 0.0 0.0 0.0 4.331861603436234 0.0 7 0.0 0.0 0.0 5.228987383887705 0.0 8 0.0 0.0 0.0 7.0277350646392165 0.0 9 0.0 0.0 0.0 7.807961729027849 0.0 10 0.0 0.0 0.0 9.400187638068347 0.0 11 0.0 0.0 0.0 10.864723743409437 0.0 12 0.0 0.0 0.0 12.16500160361608 0.0 13 0.0 0.0 0.0 12.650582547261713 0.0 14 0.0 0.0 0.0 12.861000956174822 0.0 15 0.0 0.0 0.0 13.191016153059909 0.0 16 0.0 0.0 0.0 13.890012918851031 0.0 17 0.0 0.0 0.0 14.669640100593188 0.0 18 0.0 0.0 0.0 15.804760491695667 0.0 19 0.0 0.0 0.0 16.244780754209117 0.0 20 0.0 0.0 0.0 16.674909553055713 0.0 21 0.0 0.0 0.0 17.13081610570078 0.0 22 0.0 0.0 0.0 17.60950299891194 0.0 23 0.0 0.0 0.0 18.127156264144045 0.0 24 0.0 0.0 0.0 18.497936280989506 0.0 25 0.0 0.0 0.0 18.8240548406725 0.0 26 0.0 0.0 0.0 19.11989952670845 0.0 27 0.0 0.0 0.0 19.507165316332006 0.0 28 0.0 0.0 0.0 19.845873011590996 0.0 29 0.0 0.0 0.0 20.200766738304843 0.0 30 0.0 0.0 0.0 20.691743025768762 0.0 31 0.0 0.0 0.0 21.040641926017848 0.0 32 0.0 0.0 0.0 21.38834186097398 0.0 33 0.0 0.0 0.0 21.71356119668726 0.0 34 0.0 0.0 0.0 22.0171991571274 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAG 25 7.782749E-5 40.0 1 ACAACGA 35 3.0476804E-7 40.0 13 CGGGTCA 20 0.0012544882 40.0 6 CAACGTG 25 7.782749E-5 40.0 1 TTTACGG 35 3.0476804E-7 40.0 2 ACGCACT 25 7.782749E-5 40.0 11 GACGTAG 35 3.0476804E-7 40.0 1 CATCTAG 20 0.0012544882 40.0 39 GCCATAT 25 7.782749E-5 40.0 36 TACGCTA 25 7.782749E-5 40.0 35 TAACCGG 20 0.0012544882 40.0 1 TGACACG 20 0.0012544882 40.0 1 CGGGCTA 20 0.0012544882 40.0 6 GGTATTC 25 7.782749E-5 40.0 7 ACAGCCG 20 0.0012544882 40.0 33 AACGAGC 35 3.0476804E-7 40.0 15 CGTACTT 20 0.0012544882 40.0 23 TTAACGG 20 0.0012544882 40.0 2 GCGATAC 55 5.456968E-12 40.0 9 TAGATAG 45 1.2150849E-9 40.0 1 >>END_MODULE