##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553825_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 472254 Sequences flagged as poor quality 0 Sequence length 46 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.618590843063267 31.0 31.0 34.0 30.0 34.0 2 31.772281441766506 31.0 31.0 34.0 30.0 34.0 3 31.76366955070788 31.0 31.0 34.0 30.0 34.0 4 35.53954651522274 37.0 35.0 37.0 33.0 37.0 5 35.32991568096829 37.0 35.0 37.0 33.0 37.0 6 35.328037454420716 37.0 35.0 37.0 32.0 37.0 7 35.66509124327163 37.0 35.0 37.0 35.0 37.0 8 35.446389019468334 37.0 35.0 37.0 33.0 37.0 9 37.199797143062845 39.0 37.0 39.0 34.0 39.0 10 36.65976360179056 39.0 35.0 39.0 32.0 39.0 11 36.650952665302995 39.0 35.0 39.0 32.0 39.0 12 36.74901430162582 39.0 35.0 39.0 32.0 39.0 13 35.105362792056816 39.0 35.0 39.0 30.0 39.0 14 36.83049375971405 39.0 36.0 41.0 30.0 41.0 15 37.4343404185036 39.0 36.0 41.0 32.0 41.0 16 37.64519305289103 39.0 36.0 41.0 32.0 41.0 17 37.67158986477616 39.0 36.0 41.0 33.0 41.0 18 37.70382887175122 39.0 37.0 41.0 33.0 41.0 19 37.65627607177493 39.0 36.0 41.0 33.0 41.0 20 37.61294557589772 39.0 36.0 41.0 33.0 41.0 21 37.4561676555413 39.0 36.0 41.0 32.0 41.0 22 37.466905521181395 39.0 36.0 41.0 32.0 41.0 23 37.366165241586096 39.0 36.0 41.0 32.0 41.0 24 37.33935551631114 39.0 36.0 41.0 32.0 41.0 25 37.14657366586625 39.0 35.0 40.0 31.0 41.0 26 37.16132632015822 39.0 35.0 40.0 32.0 41.0 27 37.128756982471295 39.0 35.0 40.0 32.0 41.0 28 36.983189131272574 39.0 35.0 40.0 31.0 41.0 29 36.91545227779966 39.0 35.0 40.0 31.0 41.0 30 36.778392559935966 39.0 35.0 40.0 31.0 41.0 31 36.68206304234586 39.0 35.0 40.0 31.0 41.0 32 36.566792446437724 39.0 35.0 40.0 30.0 41.0 33 36.50595865784091 39.0 35.0 40.0 30.0 41.0 34 36.340609079012566 39.0 35.0 40.0 30.0 41.0 35 36.284207227466574 39.0 35.0 40.0 30.0 41.0 36 36.13937838536042 38.0 35.0 40.0 30.0 41.0 37 36.055808950268286 38.0 35.0 40.0 30.0 41.0 38 35.92628331364054 38.0 35.0 40.0 29.0 41.0 39 35.86000330330712 38.0 35.0 40.0 29.0 41.0 40 35.70902946295849 38.0 35.0 40.0 28.0 41.0 41 35.59646715538672 38.0 34.0 40.0 28.0 41.0 42 35.567362055165226 38.0 34.0 40.0 28.0 41.0 43 35.53590652487856 38.0 34.0 40.0 28.0 41.0 44 35.410867880420284 38.0 34.0 40.0 27.0 41.0 45 35.31885807213914 38.0 34.0 40.0 27.0 41.0 46 34.19794856157915 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 10.0 10 25.0 11 16.0 12 12.0 13 8.0 14 11.0 15 15.0 16 27.0 17 61.0 18 108.0 19 224.0 20 386.0 21 677.0 22 1037.0 23 1565.0 24 2191.0 25 2961.0 26 3802.0 27 4813.0 28 6279.0 29 7743.0 30 9973.0 31 12864.0 32 17015.0 33 22525.0 34 32318.0 35 42427.0 36 52343.0 37 70750.0 38 97332.0 39 82735.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.433817394876485 25.17352949895607 21.522739881504442 20.869913224663 2 24.640130099480366 28.821989861388154 22.93977393521283 23.598106103918653 3 27.2567304882542 28.32712904496309 23.255282115132957 21.160858351649747 4 25.003493882529316 29.794771457732494 21.16107010210607 24.040664557632123 5 20.10591757825238 33.055940235551205 20.204169789985897 26.633972396210513 6 18.893434465351273 41.45904534424272 21.19029166507854 18.45722852532747 7 79.69461349189207 7.359598859935542 7.923066824209006 5.022720823963376 8 78.06117047182238 6.769873839078124 8.288548111821182 6.880407577278329 9 70.65583351332123 9.156513232286017 12.891367780897568 7.296285473495195 10 31.93641557297556 28.395736192811494 19.06770509090447 20.600143143308475 11 24.813765473664596 29.26179555916943 25.226467113036627 20.697971854129346 12 21.66630669089092 24.175761348765707 31.737793644945306 22.42013831539807 13 21.574195242390747 26.312535203513367 32.38278553490283 19.730484019193064 14 19.572306428320353 28.49695291093352 29.033740317710382 22.89700034303574 15 17.86051573941142 27.855137277820834 32.776853134118504 21.507493848649244 16 19.070246096380338 26.66425271146459 30.19074481105507 24.074756381100002 17 18.448758507074583 27.17414781028853 28.033219411587833 26.343874271049057 18 20.354089113062038 26.92978778369267 28.373925895810302 24.34219720743498 19 22.00680142465707 29.561422454865387 26.734342112507253 21.697434007970287 20 23.81578557301791 26.834711828803993 25.55023356075332 23.799269037424775 21 23.838654622300712 29.15380282644509 26.530849923981588 20.476692627272612 22 21.240264772770583 26.599457071829992 24.548230401436516 27.61204775396291 23 19.664417876820526 29.36047127181559 25.558703579006213 25.41640727235767 24 20.997598749825304 26.914541750837472 27.05747330885498 25.03038619048224 25 21.140530307842813 28.737924930228225 24.89296014432911 25.228584617599854 26 19.04293028751477 28.022420138315397 27.53539408877426 25.39925548539557 27 21.817920017617638 26.799773003510825 25.87442350938266 25.507883469488878 28 19.612115514108933 28.94332287286079 27.333384153442854 24.111177459587427 29 20.54000601371296 28.030043154743 25.0147166567144 26.41523417482965 30 21.76858216129456 25.83884943272053 25.424453789697914 26.968114616286996 31 21.072346660907055 29.606101801149382 22.627442012137536 26.694109525806027 32 19.402270811893597 29.961842567770734 24.133834758413904 26.50205186192176 33 19.234140949573746 26.69707403219454 22.188695066637866 31.880089951593842 34 18.12499205935789 29.087313183159907 25.18094076492735 27.606753992554857 35 19.423445857525824 26.744929635323366 23.551944504440407 30.279680002710407 36 19.43911539129367 29.1243695130163 23.040567152422213 28.395947943267817 37 19.091844642925203 29.77084365616808 23.687253046030314 27.450058654876404 38 18.865271654660415 30.401013014183047 23.404142685927486 27.32957264522905 39 20.467375607194434 25.157859965188223 23.622245655939388 30.75251877167795 40 21.009456775379352 26.009096799603604 28.001245092683174 24.98020133233387 41 18.073324948015262 27.34079541941413 26.429209704946917 28.156669927623696 42 20.372511402762072 27.503843270782248 26.337945258272033 25.785700068183647 43 20.36869989454827 23.93055432034456 28.42199324939545 27.278752535711714 44 20.718088147479957 25.790358578222737 26.170238896864824 27.321314377432483 45 21.277532853083297 23.283233175367492 26.945033816547877 28.49420015500133 46 22.616854489321426 25.600418418901693 25.861294981090683 25.921432110686197 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4968.0 1 4216.0 2 3464.0 3 3132.5 4 2801.0 5 2027.0 6 1253.0 7 1253.0 8 1202.0 9 1151.0 10 1210.5 11 1270.0 12 1311.0 13 1352.0 14 1372.5 15 1393.0 16 1326.0 17 1259.0 18 1376.0 19 1493.0 20 1493.0 21 1499.0 22 1505.0 23 1803.0 24 2101.0 25 2436.5 26 2772.0 27 3174.0 28 3576.0 29 4206.0 30 4836.0 31 4836.0 32 6034.0 33 7232.0 34 7821.5 35 8411.0 36 9511.0 37 10611.0 38 12620.0 39 14629.0 40 17057.5 41 19486.0 42 23317.0 43 27148.0 44 27148.0 45 33344.5 46 39541.0 47 45845.0 48 52149.0 49 53317.0 50 54485.0 51 49861.5 52 45238.0 53 38593.0 54 31948.0 55 28945.5 56 25943.0 57 25943.0 58 23424.5 59 20906.0 60 20257.5 61 19609.0 62 18461.5 63 17314.0 64 15100.0 65 12886.0 66 11140.0 67 9394.0 68 8320.5 69 7247.0 70 7247.0 71 6097.5 72 4948.0 73 4233.0 74 3518.0 75 2797.5 76 2077.0 77 1643.5 78 1210.0 79 925.0 80 640.0 81 640.0 82 458.0 83 276.0 84 213.5 85 151.0 86 93.0 87 35.0 88 29.5 89 24.0 90 13.0 91 2.0 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 472254.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.83684480278312 #Duplication Level Percentage of deduplicated Percentage of total 1 74.48283431961039 25.20264105344065 2 10.440500123524366 7.065471646862638 3 3.919304462123463 3.978506904591809 4 2.0597681716533476 2.7878422381578667 5 1.2465529752075057 2.108970978027196 6 0.8823145726110273 1.7912844756403947 7 0.6636052312821675 1.5718015054846788 8 0.5387558240450038 1.4583837763845058 9 0.43458802226859283 1.3234578716385748 >10 4.864763634721125 37.314710525804884 >50 0.4007473526691326 8.519113013260815 >100 0.05869213196571548 3.5345755902013587 >500 0.0037865891590784183 0.8840709849826985 >1k 0.0037865891590784183 2.459169435521922 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4599 0.9738403486259514 No Hit CCTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCGTCT 2016 0.42688891994562245 No Hit CTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCGTCTT 1377 0.2915803783557153 No Hit GCTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCGTCT 1268 0.2684995786165919 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1173 0.24838328526597975 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1083 0.22932574419697876 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 890 0.1884579061267877 No Hit AAAACTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCG 721 0.15267207900833027 No Hit ACTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCGTCT 641 0.13573204250255158 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCACCAACTCGT 635 0.1344615397646182 No Hit ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA 633 0.1340380388519737 No Hit TCTGTCTCTTATACACATCTGACGCTCACCAACTCGTATGCCGTCT 620 0.1312852829197847 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 493 0.10439297496686105 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3294837100373951 0.0 2 0.0 0.0 0.0 1.3971295108140958 0.0 3 0.0 0.0 0.0 1.8426524709160748 0.0 4 0.0 0.0 0.0 2.35890008342968 0.0 5 0.0 0.0 0.0 3.906372418232561 0.0 6 0.0 0.0 0.0 5.597199811965595 0.0 7 0.0 0.0 0.0 6.835728230994338 0.0 8 0.0 0.0 0.0 9.389650484696794 0.0 9 0.0 0.0 0.0 10.423416212461937 0.0 10 0.0 0.0 0.0 12.275597453912512 0.0 11 0.0 0.0 0.0 14.238524184019617 0.0 12 0.0 0.0 0.0 15.875990462759447 0.0 13 0.0 0.0 0.0 16.59318925832285 0.0 14 0.0 0.0 0.0 16.89726291360158 0.0 15 0.0 0.0 0.0 17.298953529244855 0.0 16 0.0 0.0 0.0 18.34542428438933 0.0 17 0.0 0.0 0.0 19.467066451528204 0.0 18 0.0 0.0 0.0 21.069593904974866 0.0 19 0.0 0.0 0.0 21.654236914880553 0.0 20 0.0 0.0 0.0 22.249255697146026 0.0 21 0.0 0.0 0.0 22.91817538866796 0.0 22 0.0 0.0 0.0 23.56740228775193 0.0 23 0.0 0.0 0.0 24.283754081490045 0.0 24 0.0 0.0 0.0 24.820329737810585 0.0 25 0.0 0.0 0.0 25.290204000389622 0.0 26 0.0 0.0 0.0 25.696976626984632 0.0 27 0.0 0.0 0.0 26.1452523430188 0.0 28 0.0 0.0 0.0 26.601998077305858 0.0 29 0.0 0.0 0.0 27.050697294252668 0.0 30 0.0 0.0 0.0 27.58833170285482 0.0 31 0.0 0.0 0.0 28.056300211326956 0.0 32 0.0 0.0 0.0 28.499070415496746 0.0 33 0.0 0.0 0.0 28.9405701169286 0.0 34 0.0 0.0 0.0 29.364706280942034 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 30 4.8614147E-6 40.000004 31 GGCGAAT 30 4.8614147E-6 40.000004 8 CTTAACG 20 0.0012550177 40.0 1 AGACTAT 20 0.0012550177 40.0 25 TCGTTGA 20 0.0012550177 40.0 24 GGTACAA 25 7.787672E-5 40.0 8 GGTCGAT 20 0.0012550177 40.0 8 TTATGAA 20 0.0012550177 40.0 14 TAAACGG 40 1.924127E-8 40.0 2 TGAACGG 55 5.456968E-12 40.0 2 GTGATAG 25 7.787672E-5 40.0 1 ATAGACG 25 7.787672E-5 40.0 1 TTCCGCA 20 0.0012550177 40.0 1 GCTTGCG 20 0.0012550177 40.0 1 ATCGTTG 20 0.0012550177 40.0 23 TATTCGG 20 0.0012550177 40.0 2 GTCGTGT 20 0.0012550177 40.0 32 GATATAC 20 0.0012550177 40.0 9 TGCCTAA 20 0.0012550177 40.0 23 TTAACGG 50 7.8216544E-11 40.0 2 >>END_MODULE