SRR3553822_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553822_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	665604
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4263	0.6404709106315467	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1972	0.29627225797921886	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1030	0.15474666618590033	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT	953	0.14317822609239125	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT	925	0.13897152060384252	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGC	826	0.12409781191218804	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT	789	0.11853895108803432	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	772	0.1159848798985583	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	771	0.11583464041682442	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGA	729	0.10952458218400131	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGT	680	0.102162847579041	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAACGA	20	0.001255388	40.0	28
ACGCCTA	20	0.001255388	40.0	1
ACGTTAG	20	0.001255388	40.0	1
CCGCTTA	20	0.001255388	40.0	14
CGTTCAT	35	3.0537922E-7	40.0	17
GCCGATA	55	5.456968E-12	40.0	9
TATTAGT	30	4.8644233E-6	40.0	30
CATACCC	25	7.791116E-5	40.0	28
ACCGTAA	20	0.001255388	40.0	17
CGCAACT	20	0.001255388	40.0	13
TCGAATA	20	0.001255388	40.0	27
TACCGTA	20	0.001255388	40.0	16
TATACGG	95	0.0	37.894733	2
CGCATGG	120	0.0	36.666664	2
TAGCACG	60	1.4551915E-11	36.666664	1
GTATACG	60	1.4551915E-11	36.666664	1
TACGGGT	55	2.1645974E-10	36.363636	4
GCGATAC	55	2.1645974E-10	36.363636	9
ATAACGG	55	2.1645974E-10	36.363636	2
TACAGCG	55	2.1645974E-10	36.363636	1