SRR3553821_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553821_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	628939
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4134	0.6572974485601942	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1811	0.2879452538322476	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGC	1220	0.19397747635303264	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	910	0.14468811760758993	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCT	864	0.13737421276149198	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCT	736	0.11702247753756724	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	733	0.11654548374325649	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTATTGTCGT	692	0.1100265685543431	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTA	672	0.10684660992560487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTTTCG	20	0.0012553354	40.0	12
CTCAACG	40	1.925946E-8	40.0	1
CCGGATT	20	0.0012553354	40.0	26
TAAGTCG	20	0.0012553354	40.0	1
CGTTAAG	20	0.0012553354	40.0	11
GTCGTTA	20	0.0012553354	40.0	9
GCGATCG	20	0.0012553354	40.0	9
ACGTCGG	25	7.7906225E-5	40.0	2
CGGTATG	20	0.0012553354	40.0	10
CGCAATG	20	0.0012553354	40.0	23
CTAACGG	65	0.0	36.923077	2
CATACGA	65	0.0	36.923077	18
TAGCACG	60	1.4551915E-11	36.666664	1
CACGACC	280	0.0	36.428574	27
CGTATGG	55	2.1645974E-10	36.36364	2
TTAACGG	55	2.1645974E-10	36.36364	2
GCGCTAG	55	2.1645974E-10	36.36364	1
ACGGGCT	340	0.0	35.882355	5
TACGAGG	95	0.0	35.78947	2
CAATGCG	45	5.435868E-8	35.555557	1